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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.4 nTPM
HPA:44.4 nTPM
GTEx:45.9 nTPM
FANTOM5:40.4 Scaled Tags Per Million
Pig:63.5 nTPM
Mouse:182.8 nTPM
Allen mouse:13.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.7
2019 Male, age 18, unknown 42.3
2586 Male, age 75, left hemisphere 42.3
2828 Female, age 72, unknown 41.6
2666 Male, age 74, left hemisphere 39.3
2411 Female, age 72, unknown 37.3
2219 Male, age 76, both hemispheres 36.7
1827 Male, age 72, unknown 36.4
1870 Female, age 42, unknown 34.8
1833 Male, age 53, unknown 34.5
1830 Male, age 51, unknown 31.4
Dorsal raphe nucleus
nTPM: 40.1
1828 Male, age 53, unknown 45.9
2047 Male, age 72, unknown 42.6
2298 Female, age 72, unknown 39.5
2016 Female, age 72, unknown 38.1
2750 Male, age 76, both hemispheres 34.4
Inferior colliculus
nTPM: 36.3
1890 Male, age 53, unknown 38.4
1848 Female, age 42, unknown 36.8
2097 Female, age 72, unknown 35.9
2849 Male, age 72, unknown 34.1
Median raphe nucleus
nTPM: 35.4
2220 Male, age 76, midline 35.4
Pedunculopontine tegmental nucleus
nTPM: 36.3
2334 Male, age 80, both hemispheres 38.1
1921 Female, age 85, both hemispheres 37.4
2338 Male, age 61, both hemispheres 33.5
Periaquaductal grey, anterior
nTPM: 36.0
1795 Male, age 51, unknown 37.4
1947 Male, age 18, unknown 35.9
2502 Female, age 75, unknown 34.7
Periaquaductal grey, dorsal
nTPM: 35.0
2850 Male, age 76, both hemispheres 39.7
1840 Male, age 53, unknown 34.6
2464 Female, age 72, unknown 32.9
1831 Male, age 72, unknown 32.7
Periaquaductal grey, lateral
nTPM: 37.9
2272 Male, age 74, both hemispheres 44.7
2140 Male, age 76, both hemispheres 34.9
2053 Male, age 18, unknown 34.1
Pretectal area
nTPM: 38.5
2667 Female, age 75, unknown 43.9
1817 Female, age 42, unknown 43.1
1816 Male, age 51, unknown 42.9
2007 Male, age 72, unknown 42.7
2273 Male, age 74, both hemispheres 41.0
1944 Female, age 72, unknown 39.9
1815 Male, age 53, unknown 36.7
2224 Female, age 72, unknown 36.2
2825 Male, age 18, unknown 34.6
2316 Male, age 76, right hemisphere 31.9
2407 Male, age 75, both hemispheres 30.5
Red nucleus
nTPM: 41.3
1821 Female, age 72, unknown 49.2
2725 Female, age 75, unknown 44.8
2503 Female, age 72, unknown 44.7
1954 Female, age 42, unknown 42.2
2769 Male, age 72, unknown 41.4
2227 Male, age 72, unknown 41.2
1904 Male, age 53, unknown 41.1
1865 Male, age 51, unknown 40.2
2785 Male, age 18, unknown 40.2
2823 Male, age 76, right hemisphere 39.4
2588 Male, age 74, left hemisphere 39.2
2584 Male, age 75, left hemisphere 32.6
Substantia nigra
nTPM: 44.4
1916 Female, age 42, unknown 59.6
1851 Male, age 51, unknown 50.1
2699 Male, age 18, unknown 47.3
1941 Male, age 53, unknown 47.1
2241 Male, age 72, unknown 45.9
1889 Female, age 72, unknown 43.0
2409 Female, age 72, unknown 39.1
2583 Male, age 75, right hemisphere 37.9
2665 Male, age 74, both hemispheres 37.7
2590 Female, age 75, unknown 35.9
Superior colliculus
nTPM: 35.3
2087 Female, age 72, unknown 38.8
2587 Male, age 74, left hemisphere 37.0
1796 Male, age 53, unknown 36.6
2664 Male, age 75, both hemispheres 36.3
2261 Male, age 18, unknown 36.2
2668 Female, age 75, unknown 35.8
1895 Male, age 76, right hemisphere 35.1
1839 Male, age 51, unknown 34.5
1995 Male, age 72, unknown 32.7
1913 Female, age 42, unknown 30.0
Ventral tegmental area
nTPM: 40.3
1915 Female, age 42, unknown 47.4
2410 Female, age 72, unknown 47.1
2218 Male, age 76, both hemispheres 42.1
1942 Male, age 51, unknown 37.4
2223 Female, age 72, unknown 34.4
2021 Male, age 53, unknown 33.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.9
Samples: 139

Max nTPM: 73.0
Min nTPM: 23.2
Std nTPM: 11.2
Median nTPM: 44.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 73.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 72.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 70.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 69.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 68.4
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 68.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 67.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 65.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 65.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 65.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 64.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.4
FF:10158-103A5 76 years, female 40.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.5
Pig sample Sample description nTPM
Midbrain
nTPM: 53.7
Samples: 4

Max nTPM: 62.7
Min nTPM: 43.0
Sample A Female 62.7
Sample B Female 43.0
Sample C Male 57.9
Sample D Male 51.2
Periaqueductal gray
nTPM: 38.2
Samples: 3

Max nTPM: 40.6
Min nTPM: 34.0
Sample B Female 40.6
Sample C Male 39.9
Sample D Male 34.0
Substantia nigra
nTPM: 52.7
Samples: 4

Max nTPM: 63.9
Min nTPM: 44.2
Sample A Female 63.9
Sample B Female 44.2
Sample C Male 54.1
Sample D Male 48.6
Superior colliculi
nTPM: 63.5
Samples: 4

Max nTPM: 70.8
Min nTPM: 55.7
Sample A Female 70.8
Sample B Female 65.3
Sample C Male 62.1
Sample D Male 55.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 182.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 182.8
Samples: 4

Max nTPM: 190.8
Min nTPM: 172.4
Sample A Male 172.4
Sample B Male 178.6
Sample C Female 190.8
Sample D Female 189.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.5
68193022 Antisense, RP_040825_01_A12, Mouse strain C57BL/6J (56 days, male) 13.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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