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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.1 nTPM
HPA:47.1 nTPM
GTEx:37.7 nTPM
FANTOM5:61.5 Scaled Tags Per Million
Pig:9.2 nTPM
Mouse:11.6 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.9
2666 Male, age 74, left hemisphere 54.6
2019 Male, age 18, unknown 43.4
2828 Female, age 72, unknown 42.1
1830 Male, age 51, unknown 41.4
1870 Female, age 42, unknown 40.5
1833 Male, age 53, unknown 40.0
2586 Male, age 75, left hemisphere 39.3
2219 Male, age 76, both hemispheres 37.8
2411 Female, age 72, unknown 37.0
1827 Male, age 72, unknown 32.8
Dorsal raphe nucleus
nTPM: 37.8
1828 Male, age 53, unknown 41.1
2750 Male, age 76, both hemispheres 39.7
2047 Male, age 72, unknown 39.3
2016 Female, age 72, unknown 36.0
2298 Female, age 72, unknown 32.7
Inferior colliculus
nTPM: 39.5
1890 Male, age 53, unknown 45.6
2097 Female, age 72, unknown 37.8
1848 Female, age 42, unknown 37.6
2849 Male, age 72, unknown 37.0
Median raphe nucleus
nTPM: 36.5
2220 Male, age 76, midline 36.5
Pedunculopontine tegmental nucleus
nTPM: 41.7
2338 Male, age 61, both hemispheres 48.1
2334 Male, age 80, both hemispheres 43.1
1921 Female, age 85, both hemispheres 34.1
Periaquaductal grey, anterior
nTPM: 38.0
1947 Male, age 18, unknown 39.7
2502 Female, age 75, unknown 38.8
1795 Male, age 51, unknown 35.6
Periaquaductal grey, dorsal
nTPM: 35.6
1831 Male, age 72, unknown 39.5
2850 Male, age 76, both hemispheres 37.0
2464 Female, age 72, unknown 35.3
1840 Male, age 53, unknown 30.8
Periaquaductal grey, lateral
nTPM: 35.7
2140 Male, age 76, both hemispheres 36.5
2053 Male, age 18, unknown 36.3
2272 Male, age 74, both hemispheres 34.2
Pretectal area
nTPM: 36.6
1817 Female, age 42, unknown 45.9
2007 Male, age 72, unknown 43.9
2316 Male, age 76, right hemisphere 39.9
1815 Male, age 53, unknown 38.9
1944 Female, age 72, unknown 37.6
1816 Male, age 51, unknown 35.4
2825 Male, age 18, unknown 34.0
2407 Male, age 75, both hemispheres 33.1
2667 Female, age 75, unknown 32.8
2224 Female, age 72, unknown 32.1
2273 Male, age 74, both hemispheres 28.8
Red nucleus
nTPM: 47.1
1954 Female, age 42, unknown 50.6
2823 Male, age 76, right hemisphere 50.6
2588 Male, age 74, left hemisphere 49.2
1865 Male, age 51, unknown 48.8
2769 Male, age 72, unknown 48.3
1821 Female, age 72, unknown 47.7
2227 Male, age 72, unknown 47.6
1904 Male, age 53, unknown 47.1
2725 Female, age 75, unknown 46.1
2584 Male, age 75, left hemisphere 43.5
2785 Male, age 18, unknown 43.4
2503 Female, age 72, unknown 42.3
Substantia nigra
nTPM: 39.2
2665 Male, age 74, both hemispheres 52.3
1851 Male, age 51, unknown 40.5
2699 Male, age 18, unknown 39.2
1889 Female, age 72, unknown 38.8
1916 Female, age 42, unknown 38.7
2590 Female, age 75, unknown 38.5
2583 Male, age 75, right hemisphere 37.5
2409 Female, age 72, unknown 36.5
1941 Male, age 53, unknown 35.4
2241 Male, age 72, unknown 34.7
Superior colliculus
nTPM: 37.1
2668 Female, age 75, unknown 41.1
2087 Female, age 72, unknown 39.0
2587 Male, age 74, left hemisphere 38.8
1895 Male, age 76, right hemisphere 38.2
1913 Female, age 42, unknown 37.6
1839 Male, age 51, unknown 37.2
1995 Male, age 72, unknown 37.1
2261 Male, age 18, unknown 36.6
2664 Male, age 75, both hemispheres 33.0
1796 Male, age 53, unknown 32.8
Ventral tegmental area
nTPM: 39.3
2021 Male, age 53, unknown 42.7
2218 Male, age 76, both hemispheres 41.8
2223 Female, age 72, unknown 41.0
1942 Male, age 51, unknown 38.2
2410 Female, age 72, unknown 37.5
1915 Female, age 42, unknown 34.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.7
Samples: 139

Max nTPM: 231.5
Min nTPM: 7.8
Std nTPM: 28.2
Median nTPM: 30.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 231.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 203.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 112.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 91.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 88.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 81.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 81.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 74.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 74.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 70.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 69.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.5
FF:10158-103A5 76 years, female 61.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.2
Pig sample Sample description nTPM
Midbrain
nTPM: 7.4
Samples: 4

Max nTPM: 8.6
Min nTPM: 6.2
Sample A Female 6.2
Sample B Female 6.4
Sample C Male 8.5
Sample D Male 8.6
Periaqueductal gray
nTPM: 6.1
Samples: 3

Max nTPM: 6.4
Min nTPM: 5.9
Sample B Female 5.9
Sample C Male 5.9
Sample D Male 6.4
Substantia nigra
nTPM: 8.7
Samples: 4

Max nTPM: 10.5
Min nTPM: 7.1
Sample A Female 7.1
Sample B Female 9.4
Sample C Male 7.8
Sample D Male 10.5
Superior colliculi
nTPM: 9.2
Samples: 4

Max nTPM: 11.7
Min nTPM: 7.8
Sample A Female 8.5
Sample B Female 7.8
Sample C Male 8.9
Sample D Male 11.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.6
Samples: 4

Max nTPM: 12.9
Min nTPM: 10.1
Sample A Male 12.9
Sample B Male 10.1
Sample C Female 12.1
Sample D Female 11.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68637957 Antisense, RP_050126_02_A01, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.