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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:165.8 nTPM
HPA:165.8 nTPM
GTEx:223.8 nTPM
FANTOM5:79.2 Scaled Tags Per Million
Pig:73.6 nTPM
Mouse:14.1 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 165.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 148.0
1870 Female, age 42, unknown 160.2
1830 Male, age 51, unknown 156.1
2666 Male, age 74, left hemisphere 155.3
2828 Female, age 72, unknown 152.9
1833 Male, age 53, unknown 152.6
2411 Female, age 72, unknown 145.8
2586 Male, age 75, left hemisphere 144.1
2019 Male, age 18, unknown 140.0
2219 Male, age 76, both hemispheres 137.9
1827 Male, age 72, unknown 135.4
Dorsal raphe nucleus
nTPM: 138.1
2750 Male, age 76, both hemispheres 156.5
1828 Male, age 53, unknown 140.9
2016 Female, age 72, unknown 139.1
2047 Male, age 72, unknown 129.2
2298 Female, age 72, unknown 124.6
Inferior colliculus
nTPM: 134.9
2849 Male, age 72, unknown 146.2
1848 Female, age 42, unknown 135.2
1890 Male, age 53, unknown 135.1
2097 Female, age 72, unknown 123.0
Median raphe nucleus
nTPM: 148.3
2220 Male, age 76, midline 148.3
Pedunculopontine tegmental nucleus
nTPM: 148.4
2338 Male, age 61, both hemispheres 164.2
2334 Male, age 80, both hemispheres 152.0
1921 Female, age 85, both hemispheres 128.9
Periaquaductal grey, anterior
nTPM: 128.1
1795 Male, age 51, unknown 130.9
1947 Male, age 18, unknown 127.3
2502 Female, age 75, unknown 126.0
Periaquaductal grey, dorsal
nTPM: 133.6
2464 Female, age 72, unknown 138.1
2850 Male, age 76, both hemispheres 135.1
1831 Male, age 72, unknown 132.0
1840 Male, age 53, unknown 129.0
Periaquaductal grey, lateral
nTPM: 130.0
2053 Male, age 18, unknown 135.2
2140 Male, age 76, both hemispheres 128.9
2272 Male, age 74, both hemispheres 125.9
Pretectal area
nTPM: 130.3
1815 Male, age 53, unknown 138.4
2825 Male, age 18, unknown 136.3
2316 Male, age 76, right hemisphere 135.2
2407 Male, age 75, both hemispheres 133.1
1817 Female, age 42, unknown 132.0
2224 Female, age 72, unknown 130.7
2667 Female, age 75, unknown 128.5
2007 Male, age 72, unknown 126.7
1944 Female, age 72, unknown 125.1
1816 Male, age 51, unknown 124.2
2273 Male, age 74, both hemispheres 122.5
Red nucleus
nTPM: 165.8
2769 Male, age 72, unknown 184.0
2227 Male, age 72, unknown 178.3
2588 Male, age 74, left hemisphere 171.5
2503 Female, age 72, unknown 171.4
1865 Male, age 51, unknown 171.2
2823 Male, age 76, right hemisphere 170.4
1904 Male, age 53, unknown 163.4
1954 Female, age 42, unknown 159.6
1821 Female, age 72, unknown 159.2
2725 Female, age 75, unknown 156.1
2785 Male, age 18, unknown 156.1
2584 Male, age 75, left hemisphere 148.4
Substantia nigra
nTPM: 139.4
2699 Male, age 18, unknown 156.0
2583 Male, age 75, right hemisphere 155.7
2665 Male, age 74, both hemispheres 145.2
1851 Male, age 51, unknown 141.2
2590 Female, age 75, unknown 140.7
1916 Female, age 42, unknown 137.0
1889 Female, age 72, unknown 133.3
1941 Male, age 53, unknown 131.9
2409 Female, age 72, unknown 129.5
2241 Male, age 72, unknown 123.5
Superior colliculus
nTPM: 139.7
1913 Female, age 42, unknown 158.4
1995 Male, age 72, unknown 154.5
2668 Female, age 75, unknown 147.5
2587 Male, age 74, left hemisphere 144.4
1839 Male, age 51, unknown 138.5
1796 Male, age 53, unknown 138.1
1895 Male, age 76, right hemisphere 133.4
2664 Male, age 75, both hemispheres 130.0
2087 Female, age 72, unknown 126.5
2261 Male, age 18, unknown 125.9
Ventral tegmental area
nTPM: 146.0
2223 Female, age 72, unknown 178.0
2218 Male, age 76, both hemispheres 143.8
2410 Female, age 72, unknown 143.7
2021 Male, age 53, unknown 138.9
1915 Female, age 42, unknown 136.9
1942 Male, age 51, unknown 135.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 223.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 223.8
Samples: 139

Max nTPM: 864.7
Min nTPM: 49.4
Std nTPM: 130.2
Median nTPM: 186.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 864.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 756.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 664.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 642.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 510.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 481.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 460.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 457.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 436.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 435.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 431.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.2
FF:10158-103A5 76 years, female 79.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 73.6
Pig sample Sample description nTPM
Midbrain
nTPM: 73.6
Samples: 4

Max nTPM: 85.7
Min nTPM: 63.6
Sample A Female 85.7
Sample B Female 63.6
Sample C Male 69.3
Sample D Male 75.8
Periaqueductal gray
nTPM: 61.2
Samples: 3

Max nTPM: 69.1
Min nTPM: 54.7
Sample B Female 59.7
Sample C Male 69.1
Sample D Male 54.7
Substantia nigra
nTPM: 62.0
Samples: 4

Max nTPM: 76.6
Min nTPM: 45.8
Sample A Female 76.6
Sample B Female 45.8
Sample C Male 70.5
Sample D Male 54.9
Superior colliculi
nTPM: 68.6
Samples: 4

Max nTPM: 88.8
Min nTPM: 43.4
Sample A Female 88.8
Sample B Female 43.4
Sample C Male 70.4
Sample D Male 71.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.1
Samples: 4

Max nTPM: 15.6
Min nTPM: 12.2
Sample A Male 15.1
Sample B Male 13.5
Sample C Female 12.2
Sample D Female 15.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69202358 Antisense, RP_050324_03_E03, Mouse strain C57BL/6J (56 days, male) 0.4
72340126 Antisense, RP_051101_02_A06, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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