ABOUTMENU
HELP
NEWS
LGI1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.5 nTPM
HPA:31.5 nTPM
GTEx:47.9 nTPM
FANTOM5:201.6 Scaled Tags Per Million
Pig:57.1 nTPM
Mouse:22.8 nTPM
Allen mouse:4.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 31.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 31.5
2481 Female, age 94, left hemisphere 40.7
2288 Male, age 75, left hemisphere 34.9
1857 Female, age 85, left hemisphere 32.0
1854 Male, age 80, left hemisphere 30.9
2290 Female, age 72, unknown 30.4
2846 Female, age 79, unknown 30.4
2289 Male, age 61, right hemisphere 28.4
1781 Male, age 74, unknown 24.4
Claustrum
nTPM: 24.8
2198 Male, age 80, both hemispheres 28.1
2568 Male, age 61, both hemispheres 27.6
1956 Male, age 74, unknown 26.8
2196 Female, age 79, unknown 26.3
2491 Male, age 75, both hemispheres 25.3
2284 Female, age 91, both hemispheres 24.6
2645 Female, age 72, unknown 23.4
2292 Female, age 85, both hemispheres 21.0
2392 Female, age 94, both hemispheres 20.0
Globus pallidus, externus
nTPM: 20.3
2646 Male, age 61, right hemisphere 21.9
2772 Female, age 79, unknown 21.3
2395 Male, age 75, both hemispheres 20.2
1996 Male, age 80, right hemisphere 19.3
2567 Female, age 72, unknown 18.9
Globus pallidus, internus
nTPM: 20.1
2483 Female, age 94, right hemisphere 26.8
2778 Female, age 91, both hemispheres 21.2
2287 Male, age 75, right hemisphere 19.6
1818 Male, age 74, unknown 19.1
2037 Male, age 80, right hemisphere 18.5
2111 Female, age 85, right hemisphere 17.8
2566 Female, age 72, unknown 17.5
Nucleus accumbens
nTPM: 29.5
1856 Female, age 91, right hemisphere 38.1
2286 Male, age 75, left hemisphere 30.7
1806 Female, age 85, left hemisphere 30.6
2698 Female, age 72, unknown 30.3
2824 Male, age 61, right hemisphere 29.3
1783 Male, age 74, unknown 29.2
2391 Female, age 94, left hemisphere 27.6
2732 Male, age 80, right hemisphere 20.4
Nucleus basalis of Meynert
nTPM: 24.3
2393 Male, age 80, right hemisphere 27.0
2484 Female, age 94, left hemisphere 23.5
2821 Male, age 75, both hemispheres 23.3
2569 Male, age 61, both hemispheres 23.2
Nucleus of the diagonal band
nTPM: 26.1
1812 Female, age 91, both hemispheres 30.1
1979 Male, age 74, unknown 26.8
2775 Male, age 80, right hemisphere 25.7
2195 Female, age 85, both hemispheres 25.0
2029 Male, age 61, right hemisphere 23.0
Olfactory tubercle
nTPM: 26.4
1846 Male, age 80, right hemisphere 27.7
1998 Female, age 91, both hemispheres 26.3
2856 Male, age 75, right hemisphere 26.1
2487 Female, age 94, left hemisphere 25.4
Putamen
nTPM: 30.1
2482 Female, age 94, left hemisphere 37.3
1937 Female, age 91, right hemisphere 33.9
1838 Male, age 80, right hemisphere 32.8
2647 Male, age 75, left hemisphere 29.3
2466 Female, age 79, unknown 27.7
1829 Male, age 74, unknown 26.5
2489 Female, age 72, unknown 23.2
Septal nuclei
nTPM: 24.9
2629 Female, age 94, right hemisphere 29.6
1960 Male, age 74, unknown 26.6
2031 Female, age 72, unknown 25.9
2009 Female, age 91, both hemispheres 25.2
2199 Male, age 80, right hemisphere 24.8
2059 Female, age 85, both hemispheres 21.7
2394 Male, age 61, left hemisphere 20.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 47.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 47.9
Samples: 246

Max nTPM: 130.5
Min nTPM: 9.1
Std nTPM: 19.8
Median nTPM: 45.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 130.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 124.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 105.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 93.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 91.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 90.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 88.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 87.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 86.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 85.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 85.1
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 44.1
Samples: 246

Max nTPM: 91.4
Min nTPM: 7.5
Std nTPM: 18.8
Median nTPM: 44.2
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 91.4
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 90.5
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 84.1
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 83.3
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 83.2
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 82.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 80.9
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 80.8
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 79.9
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 78.8
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 78.6
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 44.1
Samples: 205

Max nTPM: 87.9
Min nTPM: 10.5
Std nTPM: 16.4
Median nTPM: 43.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 87.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 83.5
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 82.6
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 80.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 79.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 79.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 78.3
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 76.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 74.8
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 73.6
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 73.0
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 201.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 147.8
FF:10164-103B2 76 years, female 147.8
Globus pallidus
Scaled Tags Per Million: 56.7
FF:10175-103C4 60 years, female 80.5
FF:10161-103A8 76 years, female 33.0
Nucleus accumbens
Scaled Tags Per Million: 124.0
FF:10037-101F1 23-56 years, mixed 124.0
Putamen
Scaled Tags Per Million: 201.6
FF:10176-103C5 60 years, female 201.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 57.1
Pig sample Sample description nTPM
Caudate
nTPM: 52.4
Samples: 4

Max nTPM: 54.7
Min nTPM: 50.5
Sample A Female 51.7
Sample B Female 52.7
Sample C Male 54.7
Sample D Male 50.5
Putamen
nTPM: 57.1
Samples: 4

Max nTPM: 88.6
Min nTPM: 36.6
Sample A Female 36.6
Sample B Female 51.1
Sample C Male 88.6
Sample D Male 52.0
Septum
nTPM: 42.2
Samples: 4

Max nTPM: 50.7
Min nTPM: 34.0
Sample A Female 50.7
Sample B Female 48.7
Sample C Male 34.0
Sample D Male 35.5
Ventral pallidum
nTPM: 43.2
Samples: 4

Max nTPM: 51.6
Min nTPM: 34.1
Sample A Female 50.2
Sample B Female 51.6
Sample C Male 34.1
Sample D Male 37.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 22.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 20.0
Samples: 4

Max nTPM: 22.6
Min nTPM: 16.9
Sample A Male 19.9
Sample B Male 20.6
Sample C Female 16.9
Sample D Female 22.6
Septum
nTPM: 22.8
Samples: 4

Max nTPM: 24.8
Min nTPM: 21.4
Sample A Male 22.3
Sample B Male 22.7
Sample C Female 21.4
Sample D Female 24.8
Ventral forebrain
nTPM: 21.8
Samples: 4

Max nTPM: 23.9
Min nTPM: 16.7
Sample A Male 22.7
Sample B Male 23.7
Sample C Female 16.7
Sample D Female 23.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.4
71670484 Antisense, RP_050503_04_B10, Mouse strain C57BL/6J (56 days, male) 4.4
69736094 Antisense, RP_050503_04_B10, Mouse strain C57BL/6J (56 days, male) 3.2
Pallidum
Expression energy: 2.7
71670484 Antisense, RP_050503_04_B10, Mouse strain C57BL/6J (56 days, male) 2.7
69736094 Antisense, RP_050503_04_B10, Mouse strain C57BL/6J (56 days, male) 1.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.