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LGI1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.2 nTPM
HPA:24.2 nTPM
GTEx:17.9 nTPM
FANTOM5:31.5 Scaled Tags Per Million
Pig:38.2 nTPM
Mouse:19.0 nTPM
Allen mouse:4.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.6
1827 Male, age 72, unknown 24.9
2019 Male, age 18, unknown 24.0
2828 Female, age 72, unknown 22.9
2586 Male, age 75, left hemisphere 22.5
1870 Female, age 42, unknown 21.6
2666 Male, age 74, left hemisphere 21.0
2411 Female, age 72, unknown 20.3
2219 Male, age 76, both hemispheres 20.1
1833 Male, age 53, unknown 19.5
1830 Male, age 51, unknown 19.3
Dorsal raphe nucleus
nTPM: 20.9
2298 Female, age 72, unknown 24.7
2016 Female, age 72, unknown 20.8
1828 Male, age 53, unknown 20.1
2750 Male, age 76, both hemispheres 19.5
2047 Male, age 72, unknown 19.3
Inferior colliculus
nTPM: 24.2
2097 Female, age 72, unknown 25.7
1848 Female, age 42, unknown 25.3
2849 Male, age 72, unknown 24.2
1890 Male, age 53, unknown 21.4
Median raphe nucleus
nTPM: 19.3
2220 Male, age 76, midline 19.3
Pedunculopontine tegmental nucleus
nTPM: 22.6
2334 Male, age 80, both hemispheres 23.0
2338 Male, age 61, both hemispheres 22.6
1921 Female, age 85, both hemispheres 22.3
Periaquaductal grey, anterior
nTPM: 22.4
1795 Male, age 51, unknown 23.8
1947 Male, age 18, unknown 23.7
2502 Female, age 75, unknown 19.7
Periaquaductal grey, dorsal
nTPM: 22.0
1840 Male, age 53, unknown 23.7
2850 Male, age 76, both hemispheres 22.6
1831 Male, age 72, unknown 21.2
2464 Female, age 72, unknown 20.5
Periaquaductal grey, lateral
nTPM: 20.2
2053 Male, age 18, unknown 20.9
2140 Male, age 76, both hemispheres 20.8
2272 Male, age 74, both hemispheres 19.0
Pretectal area
nTPM: 24.1
1817 Female, age 42, unknown 31.6
2007 Male, age 72, unknown 28.0
2273 Male, age 74, both hemispheres 27.4
1816 Male, age 51, unknown 24.5
1815 Male, age 53, unknown 24.2
1944 Female, age 72, unknown 23.7
2667 Female, age 75, unknown 23.5
2224 Female, age 72, unknown 21.4
2825 Male, age 18, unknown 21.2
2316 Male, age 76, right hemisphere 20.3
2407 Male, age 75, both hemispheres 19.7
Red nucleus
nTPM: 20.7
2785 Male, age 18, unknown 23.4
2725 Female, age 75, unknown 22.9
1821 Female, age 72, unknown 21.9
2503 Female, age 72, unknown 21.5
2588 Male, age 74, left hemisphere 20.7
1865 Male, age 51, unknown 20.5
1904 Male, age 53, unknown 19.9
2584 Male, age 75, left hemisphere 19.8
2823 Male, age 76, right hemisphere 19.8
2769 Male, age 72, unknown 19.4
2227 Male, age 72, unknown 19.2
1954 Female, age 42, unknown 19.1
Substantia nigra
nTPM: 22.3
1941 Male, age 53, unknown 27.8
1889 Female, age 72, unknown 26.5
2409 Female, age 72, unknown 24.0
2590 Female, age 75, unknown 22.0
1916 Female, age 42, unknown 21.9
2241 Male, age 72, unknown 21.9
1851 Male, age 51, unknown 20.5
2665 Male, age 74, both hemispheres 20.4
2583 Male, age 75, right hemisphere 20.1
2699 Male, age 18, unknown 18.1
Superior colliculus
nTPM: 22.2
1796 Male, age 53, unknown 24.1
1839 Male, age 51, unknown 23.9
1895 Male, age 76, right hemisphere 23.2
2261 Male, age 18, unknown 22.2
2668 Female, age 75, unknown 22.2
1995 Male, age 72, unknown 21.9
2087 Female, age 72, unknown 21.7
2587 Male, age 74, left hemisphere 21.3
2664 Male, age 75, both hemispheres 21.3
1913 Female, age 42, unknown 20.3
Ventral tegmental area
nTPM: 20.8
2410 Female, age 72, unknown 21.5
2218 Male, age 76, both hemispheres 21.3
1915 Female, age 42, unknown 21.1
1942 Male, age 51, unknown 21.1
2223 Female, age 72, unknown 20.3
2021 Male, age 53, unknown 19.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.9
Samples: 139

Max nTPM: 154.3
Min nTPM: 3.0
Std nTPM: 16.7
Median nTPM: 13.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 154.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 97.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 75.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 53.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 40.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 37.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 34.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 34.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 33.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 32.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 32.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.5
FF:10158-103A5 76 years, female 31.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.2
Pig sample Sample description nTPM
Midbrain
nTPM: 34.2
Samples: 4

Max nTPM: 38.7
Min nTPM: 25.6
Sample A Female 25.6
Sample B Female 38.7
Sample C Male 36.1
Sample D Male 36.4
Periaqueductal gray
nTPM: 35.0
Samples: 3

Max nTPM: 40.6
Min nTPM: 31.9
Sample B Female 32.5
Sample C Male 40.6
Sample D Male 31.9
Substantia nigra
nTPM: 38.2
Samples: 4

Max nTPM: 49.6
Min nTPM: 21.1
Sample A Female 49.6
Sample B Female 36.5
Sample C Male 45.5
Sample D Male 21.1
Superior colliculi
nTPM: 29.5
Samples: 4

Max nTPM: 32.2
Min nTPM: 24.9
Sample A Female 30.9
Sample B Female 24.9
Sample C Male 32.2
Sample D Male 30.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.0
Samples: 4

Max nTPM: 19.6
Min nTPM: 18.0
Sample A Male 19.6
Sample B Male 18.0
Sample C Female 19.1
Sample D Female 19.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
71670484 Antisense, RP_050503_04_B10, Mouse strain C57BL/6J (56 days, male) 4.0
69736094 Antisense, RP_050503_04_B10, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.