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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.1 nTPM
HPA:23.1 nTPM
GTEx:21.1 nTPM
FANTOM5:168.5 Scaled Tags Per Million
Pig:64.6 nTPM
Mouse:96.0 nTPM
Allen mouse:3.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 23.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.8
2846 Female, age 79, unknown 6.4
1781 Male, age 74, unknown 0.0
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 18.4
2568 Male, age 61, both hemispheres 56.6
2198 Male, age 80, both hemispheres 29.7
2284 Female, age 91, both hemispheres 26.4
2645 Female, age 72, unknown 17.2
2491 Male, age 75, both hemispheres 15.5
1956 Male, age 74, unknown 11.5
2392 Female, age 94, both hemispheres 8.7
2196 Female, age 79, unknown 0.0
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.5
1856 Female, age 91, right hemisphere 4.0
1783 Male, age 74, unknown 0.0
1806 Female, age 85, left hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.8
2393 Male, age 80, right hemisphere 3.2
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 23.1
2029 Male, age 61, right hemisphere 39.2
2195 Female, age 85, both hemispheres 32.9
2775 Male, age 80, right hemisphere 26.4
1812 Female, age 91, both hemispheres 17.1
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 18.1
1846 Male, age 80, right hemisphere 24.2
1998 Female, age 91, both hemispheres 20.5
2487 Female, age 94, left hemisphere 15.9
2856 Male, age 75, right hemisphere 11.8
Putamen
nTPM: 3.8
1838 Male, age 80, right hemisphere 11.7
2466 Female, age 79, unknown 11.0
1829 Male, age 74, unknown 4.2
1937 Female, age 91, right hemisphere 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 9.8
1960 Male, age 74, unknown 35.4
2629 Female, age 94, right hemisphere 14.3
2031 Female, age 72, unknown 12.1
2009 Female, age 91, both hemispheres 5.1
2059 Female, age 85, both hemispheres 1.5
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 21.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.3
Samples: 246

Max nTPM: 63.2
Min nTPM: 5.5
Std nTPM: 8.3
Median nTPM: 18.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 63.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 49.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 42.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 40.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 38.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 37.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 35.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 35.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 33.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 33.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 33.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 19.3
Samples: 246

Max nTPM: 45.5
Min nTPM: 3.0
Std nTPM: 6.9
Median nTPM: 19.5
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 45.5
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 37.9
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 35.3
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 34.9
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 34.7
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 33.1
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 32.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 32.2
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 31.7
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 30.7
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 30.5
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Brain - Putamen (basal ganglia)
Average nTPM: 21.1
Samples: 205

Max nTPM: 55.4
Min nTPM: 3.1
Std nTPM: 9.1
Median nTPM: 20.2
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 55.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 49.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 49.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 44.5
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 41.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 40.1
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 39.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 38.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 37.2
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 37.2
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 36.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 168.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 96.0
FF:10164-103B2 76 years, female 96.0
Globus pallidus
Scaled Tags Per Million: 49.4
FF:10175-103C4 60 years, female 65.5
FF:10161-103A8 76 years, female 33.4
Nucleus accumbens
Scaled Tags Per Million: 168.5
FF:10037-101F1 23-56 years, mixed 168.5
Putamen
Scaled Tags Per Million: 83.7
FF:10176-103C5 60 years, female 83.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 64.6
Pig sample Sample description nTPM
Caudate
nTPM: 49.1
Samples: 4

Max nTPM: 65.2
Min nTPM: 40.2
Sample A Female 40.2
Sample B Female 44.5
Sample C Male 65.2
Sample D Male 46.5
Putamen
nTPM: 64.6
Samples: 4

Max nTPM: 106.9
Min nTPM: 28.2
Sample A Female 28.2
Sample B Female 59.8
Sample C Male 106.9
Sample D Male 63.5
Septum
nTPM: 28.0
Samples: 4

Max nTPM: 36.6
Min nTPM: 19.7
Sample A Female 36.6
Sample B Female 32.6
Sample C Male 22.9
Sample D Male 19.7
Ventral pallidum
nTPM: 38.7
Samples: 4

Max nTPM: 44.7
Min nTPM: 27.0
Sample A Female 44.7
Sample B Female 44.5
Sample C Male 27.0
Sample D Male 38.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 96.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 96.0
Samples: 4

Max nTPM: 100.8
Min nTPM: 89.5
Sample A Male 100.8
Sample B Male 97.0
Sample C Female 89.5
Sample D Female 96.5
Septum
nTPM: 38.6
Samples: 4

Max nTPM: 41.3
Min nTPM: 36.4
Sample A Male 41.3
Sample B Male 39.9
Sample C Female 36.4
Sample D Female 36.7
Ventral forebrain
nTPM: 59.0
Samples: 4

Max nTPM: 64.0
Min nTPM: 56.7
Sample A Male 58.1
Sample B Male 57.2
Sample C Female 64.0
Sample D Female 56.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.7
565 Antisense, RP_Baylor_103366, Mouse strain C57BL/6J (56 days, male) 6.7
566 Antisense, RP_Baylor_103366, Mouse strain C57BL/6J (56 days, male) 6.6
567 Sense, RPS_Baylor_37116, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 3.0
566 Antisense, RP_Baylor_103366, Mouse strain C57BL/6J (56 days, male) 5.2
565 Antisense, RP_Baylor_103366, Mouse strain C57BL/6J (56 days, male) 2.7
567 Sense, RPS_Baylor_37116, Mouse strain C57BL/6J (56 days, male) 0.7

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.