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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.6 nTPM
HPA:17.6 nTPM
GTEx:16.5 nTPM
FANTOM5:77.5 Scaled Tags Per Million
Pig:54.8 nTPM
Mouse:77.7 nTPM
Allen mouse:7.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 17.6
Sample id Sample description nTPM
Hippocampus
nTPM: 0.0
1855 Male, age 76, left hemisphere 0.0
1898 Male, age 80, left hemisphere 0.0
1911 Female, age 85, right hemisphere 0.0
2148 Female, age 91, left hemisphere 0.0
2529 Female, age 94, left hemisphere 0.0
2621 Female, age 67, right hemisphere 0.0
Dentate gyrus
nTPM: 0.2
1927 Female, age 91, both hemispheres 1.2
2010 Male, age 76, both hemispheres 0.0
2246 Female, age 85, both hemispheres 0.0
2528 Male, age 74, both hemispheres 0.0
2530 Female, age 94, left hemisphere 0.0
2531 Female, age 67, both hemispheres 0.0
Entorhinal gyrus
nTPM: 11.8
2764 Male, age 80, right hemisphere 23.9
1938 Female, age 85, left hemisphere 23.2
2613 Female, age 94, left hemisphere 16.0
1787 Male, age 76, left hemisphere 7.8
2117 Female, age 91, right hemisphere 0.0
2686 Male, age 75, right hemisphere 0.0
Hippocampus, CA1
nTPM: 0.0
1873 Female, age 85, both hemispheres 0.0
2045 Male, age 76, both hemispheres 0.0
2082 Female, age 91, right hemisphere 0.0
2527 Male, age 74, both hemispheres 0.0
2749 Male, age 80, left hemisphere 0.0
Hippocampus, CA2
nTPM: 0.5
1892 Male, age 76, both hemispheres 3.2
1940 Female, age 85, left hemisphere 0.0
1963 Male, age 80, left hemisphere 0.0
2113 Female, age 91, right hemisphere 0.0
2249 Male, age 74, both hemispheres 0.0
2437 Female, age 94, left hemisphere 0.0
Hippocampus, CA3
nTPM: 2.3
2620 Female, age 94, left hemisphere 14.2
1867 Male, age 76, both hemispheres 0.0
1891 Female, age 85, both hemispheres 0.0
2137 Male, age 80, left hemisphere 0.0
2436 Male, age 74, both hemispheres 0.0
2861 Female, age 67, both hemispheres 0.0
Parahippocampal cortex
nTPM: 4.9
1850 Male, age 80, both hemispheres 25.2
2693 Female, age 94, both hemispheres 6.8
2622 Female, age 67, right hemisphere 6.4
2532 Female, age 72, left hemisphere 4.9
1990 Female, age 91, right hemisphere 4.3
2245 Female, age 91, both hemispheres 1.5
1933 Female, age 85, both hemispheres 0.0
2018 Male, age 76, both hemispheres 0.0
2250 Female, age 67, right hemisphere 0.0
2692 Male, age 74, both hemispheres 0.0
Perirhinal gyrus
nTPM: 17.6
1794 Male, age 80, right hemisphere 34.0
2848 Male, age 76, right hemisphere 20.0
1847 Female, age 91, left hemisphere 17.6
1841 Female, age 85, right hemisphere 16.3
2521 Female, age 94, right hemisphere 0.0
Subiculum
nTPM: 0.0
1901 Male, age 80, both hemispheres 0.0
1977 Female, age 85, both hemispheres 0.0
2042 Male, age 76, both hemispheres 0.0
2438 Female, age 94, left hemisphere 0.0
2619 Male, age 74, both hemispheres 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.5
Samples: 197

Max nTPM: 52.6
Min nTPM: 1.8
Std nTPM: 9.7
Median nTPM: 14.2
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 52.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 51.3
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 46.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 46.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 42.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 40.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 40.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 39.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 39.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 37.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 36.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 77.5
FF:10153-102I9 76 years, female 83.9
FF:10169-103B7 60 years, female 71.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 54.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 38.5
Samples: 4

Max nTPM: 63.6
Min nTPM: 28.2
Sample A Female 30.8
Sample B Female 31.2
Sample C Male 63.6
Sample D Male 28.2
Entorhinal cortex
nTPM: 54.8
Samples: 4

Max nTPM: 59.6
Min nTPM: 50.9
Sample A Female 57.4
Sample B Female 59.6
Sample C Male 51.2
Sample D Male 50.9
Subiculum
nTPM: 42.6
Samples: 4

Max nTPM: 53.5
Min nTPM: 31.0
Sample A Female 53.5
Sample B Female 31.0
Sample C Male 50.0
Sample D Male 35.8
Ventral hippocampus
nTPM: 30.8
Samples: 4

Max nTPM: 36.8
Min nTPM: 19.8
Sample A Female 19.8
Sample B Female 30.5
Sample C Male 36.8
Sample D Male 36.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 77.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 77.7
Samples: 4

Max nTPM: 91.4
Min nTPM: 66.5
Sample A Male 91.4
Sample B Male 83.2
Sample C Female 69.5
Sample D Female 66.5
Hippocampal formation
nTPM: 39.3
Samples: 4

Max nTPM: 42.9
Min nTPM: 32.5
Sample A Male 41.2
Sample B Male 40.7
Sample C Female 32.5
Sample D Female 42.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.7
566 Antisense, RP_Baylor_103366, Mouse strain C57BL/6J (56 days, male) 7.7
565 Antisense, RP_Baylor_103366, Mouse strain C57BL/6J (56 days, male) 5.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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