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COPZ1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.9 nTPM
HPA:71.9 nTPM
GTEx:65.8 nTPM
FANTOM5:118.4 Scaled Tags Per Million
Pig:53.7 nTPM
Mouse:124.2 nTPM
Allen mouse:4.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 71.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 71.9
1857 Female, age 85, left hemisphere 75.3
2481 Female, age 94, left hemisphere 75.2
1854 Male, age 80, left hemisphere 73.4
2290 Female, age 72, unknown 72.5
1781 Male, age 74, unknown 71.1
2846 Female, age 79, unknown 70.5
2288 Male, age 75, left hemisphere 69.7
2289 Male, age 61, right hemisphere 67.3
Claustrum
nTPM: 66.6
2392 Female, age 94, both hemispheres 69.2
2196 Female, age 79, unknown 68.1
2198 Male, age 80, both hemispheres 67.7
1956 Male, age 74, unknown 66.7
2491 Male, age 75, both hemispheres 66.7
2292 Female, age 85, both hemispheres 66.4
2645 Female, age 72, unknown 65.7
2568 Male, age 61, both hemispheres 65.5
2284 Female, age 91, both hemispheres 63.6
Globus pallidus, externus
nTPM: 69.4
2395 Male, age 75, both hemispheres 73.0
1996 Male, age 80, right hemisphere 72.2
2772 Female, age 79, unknown 72.1
2646 Male, age 61, right hemisphere 65.5
2567 Female, age 72, unknown 64.3
Globus pallidus, internus
nTPM: 70.0
2287 Male, age 75, right hemisphere 72.5
2483 Female, age 94, right hemisphere 71.9
1818 Male, age 74, unknown 71.3
2778 Female, age 91, both hemispheres 70.2
2037 Male, age 80, right hemisphere 69.9
2111 Female, age 85, right hemisphere 69.0
2566 Female, age 72, unknown 64.9
Nucleus accumbens
nTPM: 71.5
1856 Female, age 91, right hemisphere 74.1
1806 Female, age 85, left hemisphere 73.3
1783 Male, age 74, unknown 72.7
2698 Female, age 72, unknown 72.0
2824 Male, age 61, right hemisphere 71.9
2286 Male, age 75, left hemisphere 70.0
2391 Female, age 94, left hemisphere 69.0
2732 Male, age 80, right hemisphere 68.7
Nucleus basalis of Meynert
nTPM: 67.7
2393 Male, age 80, right hemisphere 70.9
2484 Female, age 94, left hemisphere 68.9
2569 Male, age 61, both hemispheres 66.0
2821 Male, age 75, both hemispheres 64.8
Nucleus of the diagonal band
nTPM: 70.5
1812 Female, age 91, both hemispheres 73.6
2775 Male, age 80, right hemisphere 71.3
1979 Male, age 74, unknown 69.6
2195 Female, age 85, both hemispheres 69.3
2029 Male, age 61, right hemisphere 68.7
Olfactory tubercle
nTPM: 68.9
1846 Male, age 80, right hemisphere 72.8
2856 Male, age 75, right hemisphere 67.9
2487 Female, age 94, left hemisphere 67.8
1998 Female, age 91, both hemispheres 67.3
Putamen
nTPM: 70.5
1838 Male, age 80, right hemisphere 75.9
2482 Female, age 94, left hemisphere 72.3
1937 Female, age 91, right hemisphere 71.4
2466 Female, age 79, unknown 70.8
1829 Male, age 74, unknown 70.5
2489 Female, age 72, unknown 67.1
2647 Male, age 75, left hemisphere 65.6
Septal nuclei
nTPM: 68.7
1960 Male, age 74, unknown 70.2
2031 Female, age 72, unknown 70.1
2059 Female, age 85, both hemispheres 69.0
2199 Male, age 80, right hemisphere 69.0
2009 Female, age 91, both hemispheres 67.8
2629 Female, age 94, right hemisphere 67.6
2394 Male, age 61, left hemisphere 67.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 65.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 60.1
Samples: 246

Max nTPM: 105.0
Min nTPM: 44.5
Std nTPM: 8.8
Median nTPM: 59.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 105.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 86.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 86.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 84.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 82.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 81.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 80.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 80.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 79.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 77.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 77.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 65.8
Samples: 246

Max nTPM: 102.8
Min nTPM: 41.0
Std nTPM: 9.1
Median nTPM: 65.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 102.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 91.6
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 88.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 87.2
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 86.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 84.7
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 83.6
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 83.4
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 83.4
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 83.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 81.7
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Brain - Putamen (basal ganglia)
Average nTPM: 60.0
Samples: 205

Max nTPM: 84.2
Min nTPM: 41.1
Std nTPM: 8.4
Median nTPM: 59.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 84.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 81.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 81.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 80.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 80.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 79.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 78.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 77.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 77.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 77.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 76.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 92.3
FF:10164-103B2 76 years, female 92.3
Globus pallidus
Scaled Tags Per Million: 68.9
FF:10161-103A8 76 years, female 69.2
FF:10175-103C4 60 years, female 68.6
Nucleus accumbens
Scaled Tags Per Million: 118.4
FF:10037-101F1 23-56 years, mixed 118.4
Putamen
Scaled Tags Per Million: 101.2
FF:10176-103C5 60 years, female 101.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 53.7
Pig sample Sample description nTPM
Caudate
nTPM: 53.2
Samples: 4

Max nTPM: 61.7
Min nTPM: 45.8
Sample A Female 45.8
Sample B Female 59.0
Sample C Male 61.7
Sample D Male 46.2
Putamen
nTPM: 53.7
Samples: 4

Max nTPM: 68.5
Min nTPM: 41.5
Sample A Female 41.5
Sample B Female 52.8
Sample C Male 68.5
Sample D Male 51.9
Septum
nTPM: 44.7
Samples: 4

Max nTPM: 47.8
Min nTPM: 39.1
Sample A Female 47.8
Sample B Female 46.6
Sample C Male 45.4
Sample D Male 39.1
Ventral pallidum
nTPM: 43.1
Samples: 4

Max nTPM: 53.1
Min nTPM: 38.6
Sample A Female 40.9
Sample B Female 53.1
Sample C Male 38.6
Sample D Male 39.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 124.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 124.2
Samples: 4

Max nTPM: 135.7
Min nTPM: 115.5
Sample A Male 118.9
Sample B Male 115.5
Sample C Female 126.7
Sample D Female 135.7
Septum
nTPM: 114.9
Samples: 4

Max nTPM: 118.9
Min nTPM: 109.2
Sample A Male 109.2
Sample B Male 118.9
Sample C Female 115.1
Sample D Female 116.4
Ventral forebrain
nTPM: 107.8
Samples: 4

Max nTPM: 112.7
Min nTPM: 101.7
Sample A Male 101.7
Sample B Male 108.1
Sample C Female 112.7
Sample D Female 108.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.6
385996 Antisense, RP_040625_01_G06, Mouse strain C57BL/6J (56 days, male) 4.6
Pallidum
Expression energy: 3.9
385996 Antisense, RP_040625_01_G06, Mouse strain C57BL/6J (56 days, male) 3.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.