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COPZ1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.8 nTPM
HPA:70.8 nTPM
GTEx:57.7 nTPM
FANTOM5:74.1 Scaled Tags Per Million
Pig:43.3 nTPM
Mouse:86.7 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.4
1833 Male, age 53, unknown 70.8
2019 Male, age 18, unknown 70.1
2411 Female, age 72, unknown 69.4
1870 Female, age 42, unknown 68.9
2666 Male, age 74, left hemisphere 68.9
2586 Male, age 75, left hemisphere 68.7
2828 Female, age 72, unknown 68.3
1827 Male, age 72, unknown 67.2
1830 Male, age 51, unknown 66.9
2219 Male, age 76, both hemispheres 64.8
Dorsal raphe nucleus
nTPM: 69.3
2750 Male, age 76, both hemispheres 70.1
2298 Female, age 72, unknown 69.6
2016 Female, age 72, unknown 69.4
1828 Male, age 53, unknown 69.3
2047 Male, age 72, unknown 67.8
Inferior colliculus
nTPM: 68.2
2097 Female, age 72, unknown 69.5
1890 Male, age 53, unknown 68.6
1848 Female, age 42, unknown 68.5
2849 Male, age 72, unknown 66.4
Median raphe nucleus
nTPM: 68.8
2220 Male, age 76, midline 68.8
Pedunculopontine tegmental nucleus
nTPM: 69.1
2338 Male, age 61, both hemispheres 70.4
2334 Male, age 80, both hemispheres 69.0
1921 Female, age 85, both hemispheres 67.8
Periaquaductal grey, anterior
nTPM: 67.7
2502 Female, age 75, unknown 69.5
1795 Male, age 51, unknown 67.0
1947 Male, age 18, unknown 66.7
Periaquaductal grey, dorsal
nTPM: 69.2
2850 Male, age 76, both hemispheres 70.5
1840 Male, age 53, unknown 69.3
2464 Female, age 72, unknown 68.5
1831 Male, age 72, unknown 68.3
Periaquaductal grey, lateral
nTPM: 68.7
2140 Male, age 76, both hemispheres 69.5
2053 Male, age 18, unknown 68.6
2272 Male, age 74, both hemispheres 67.8
Pretectal area
nTPM: 69.3
1817 Female, age 42, unknown 71.0
2667 Female, age 75, unknown 70.9
1944 Female, age 72, unknown 70.2
1816 Male, age 51, unknown 69.8
2273 Male, age 74, both hemispheres 69.8
1815 Male, age 53, unknown 69.5
2224 Female, age 72, unknown 69.1
2407 Male, age 75, both hemispheres 68.7
2007 Male, age 72, unknown 68.5
2316 Male, age 76, right hemisphere 67.6
2825 Male, age 18, unknown 66.8
Red nucleus
nTPM: 69.0
1954 Female, age 42, unknown 72.5
1821 Female, age 72, unknown 71.3
1865 Male, age 51, unknown 71.1
1904 Male, age 53, unknown 70.6
2785 Male, age 18, unknown 69.9
2227 Male, age 72, unknown 69.5
2725 Female, age 75, unknown 69.3
2769 Male, age 72, unknown 68.2
2823 Male, age 76, right hemisphere 67.7
2503 Female, age 72, unknown 67.2
2584 Male, age 75, left hemisphere 66.3
2588 Male, age 74, left hemisphere 65.2
Substantia nigra
nTPM: 70.8
2241 Male, age 72, unknown 76.7
1851 Male, age 51, unknown 72.8
2409 Female, age 72, unknown 72.6
2699 Male, age 18, unknown 72.1
1916 Female, age 42, unknown 71.6
1889 Female, age 72, unknown 70.2
1941 Male, age 53, unknown 68.5
2583 Male, age 75, right hemisphere 68.3
2590 Female, age 75, unknown 67.8
2665 Male, age 74, both hemispheres 67.5
Superior colliculus
nTPM: 68.8
1995 Male, age 72, unknown 70.2
1895 Male, age 76, right hemisphere 69.1
1913 Female, age 42, unknown 68.9
2087 Female, age 72, unknown 68.9
2587 Male, age 74, left hemisphere 68.9
1796 Male, age 53, unknown 68.7
2664 Male, age 75, both hemispheres 68.7
2261 Male, age 18, unknown 68.4
1839 Male, age 51, unknown 68.2
2668 Female, age 75, unknown 67.9
Ventral tegmental area
nTPM: 70.0
1915 Female, age 42, unknown 72.9
2410 Female, age 72, unknown 71.9
2218 Male, age 76, both hemispheres 69.9
2223 Female, age 72, unknown 69.7
1942 Male, age 51, unknown 68.4
2021 Male, age 53, unknown 67.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.7
Samples: 139

Max nTPM: 113.8
Min nTPM: 38.7
Std nTPM: 9.7
Median nTPM: 55.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 113.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 91.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 82.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 78.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 77.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 76.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 76.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 75.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 70.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 70.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 70.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.1
FF:10158-103A5 76 years, female 74.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.3
Pig sample Sample description nTPM
Midbrain
nTPM: 42.4
Samples: 4

Max nTPM: 53.8
Min nTPM: 37.5
Sample A Female 53.8
Sample B Female 38.1
Sample C Male 40.0
Sample D Male 37.5
Periaqueductal gray
nTPM: 36.6
Samples: 3

Max nTPM: 41.0
Min nTPM: 33.2
Sample B Female 35.6
Sample C Male 41.0
Sample D Male 33.2
Substantia nigra
nTPM: 40.3
Samples: 4

Max nTPM: 51.0
Min nTPM: 33.2
Sample A Female 51.0
Sample B Female 39.4
Sample C Male 37.7
Sample D Male 33.2
Superior colliculi
nTPM: 43.3
Samples: 4

Max nTPM: 48.1
Min nTPM: 39.9
Sample A Female 48.1
Sample B Female 44.7
Sample C Male 40.4
Sample D Male 39.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 86.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 86.7
Samples: 4

Max nTPM: 91.3
Min nTPM: 82.6
Sample A Male 82.6
Sample B Male 85.3
Sample C Female 91.3
Sample D Female 87.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
385996 Antisense, RP_040625_01_G06, Mouse strain C57BL/6J (56 days, male) 3.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.