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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi 		62.647
RNA expressioni
Consensus:58.8 nTPM
HPA:58.8 nTPM
GTEx:101.9 nTPM
FANTOM5:348.0 Scaled Tags Per Million
Pig:149.8 nTPM
Mouse:262.5 nTPM
Allen mouse:21.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004105Antibody CAB022161
Glial cells Not detectedMedium
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA004105
Hippocampal formation mean intensity 62.647
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 36.965
Molecular layer of the dentate gyrus 41.287
Granular dentate gyrus 27.189
CA1 - oriens layer 61.005
CA1 - pyramidal layer 41.666
CA1 - radiatum layer 60.449
CA2 - oriens layer 60.656
CA2 - pyramidal layer 42.815
CA2 - radiatum layer 62.647
CA3 - oriens layer 44.087
CA3 - pyramidal layer 24.092
CA3 - radiatum layer 54.180
Stratum lucidum 46.261
Lacunosum moleculare 48.940
Subiculum 34.670

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 58.8
Sample id Sample description nTPM
Hippocampus
nTPM: 38.5
2621 Female, age 67, right hemisphere 51.1
1898 Male, age 80, left hemisphere 49.2
1855 Male, age 76, left hemisphere 46.7
1911 Female, age 85, right hemisphere 37.9
2148 Female, age 91, left hemisphere 35.8
2529 Female, age 94, left hemisphere 10.1
Dentate gyrus
nTPM: 44.4
1927 Female, age 91, both hemispheres 73.0
2010 Male, age 76, both hemispheres 48.8
2531 Female, age 67, both hemispheres 43.6
2530 Female, age 94, left hemisphere 43.0
2246 Female, age 85, both hemispheres 34.7
2528 Male, age 74, both hemispheres 23.5
Entorhinal gyrus
nTPM: 23.8
2613 Female, age 94, left hemisphere 38.2
1787 Male, age 76, left hemisphere 34.2
2764 Male, age 80, right hemisphere 31.3
1938 Female, age 85, left hemisphere 25.3
2686 Male, age 75, right hemisphere 13.1
2117 Female, age 91, right hemisphere 1.1
Hippocampus, CA1
nTPM: 58.8
2749 Male, age 80, left hemisphere 161.3
1873 Female, age 85, both hemispheres 59.2
2527 Male, age 74, both hemispheres 32.9
2045 Male, age 76, both hemispheres 29.9
2082 Female, age 91, right hemisphere 10.8
Hippocampus, CA2
nTPM: 36.9
1892 Male, age 76, both hemispheres 80.1
1963 Male, age 80, left hemisphere 59.5
2249 Male, age 74, both hemispheres 28.7
1940 Female, age 85, left hemisphere 22.0
2437 Female, age 94, left hemisphere 16.8
2113 Female, age 91, right hemisphere 14.2
Hippocampus, CA3
nTPM: 53.0
2137 Male, age 80, left hemisphere 134.6
2620 Female, age 94, left hemisphere 66.8
1867 Male, age 76, both hemispheres 43.3
2861 Female, age 67, both hemispheres 33.9
1891 Female, age 85, both hemispheres 19.8
2436 Male, age 74, both hemispheres 19.3
Parahippocampal cortex
nTPM: 31.1
2245 Female, age 91, both hemispheres 58.3
1850 Male, age 80, both hemispheres 41.7
2693 Female, age 94, both hemispheres 40.9
2250 Female, age 67, right hemisphere 36.1
2532 Female, age 72, left hemisphere 33.7
1933 Female, age 85, both hemispheres 27.8
2622 Female, age 67, right hemisphere 27.5
2018 Male, age 76, both hemispheres 23.2
1990 Female, age 91, right hemisphere 19.8
2692 Male, age 74, both hemispheres 1.8
Perirhinal gyrus
nTPM: 46.9
2521 Female, age 94, right hemisphere 59.0
1794 Male, age 80, right hemisphere 51.4
2848 Male, age 76, right hemisphere 42.4
1841 Female, age 85, right hemisphere 42.3
1847 Female, age 91, left hemisphere 39.5
Subiculum
nTPM: 20.3
1901 Male, age 80, both hemispheres 50.3
2042 Male, age 76, both hemispheres 25.6
1977 Female, age 85, both hemispheres 23.6
2438 Female, age 94, left hemisphere 10.4
2729 Female, age 91, right hemisphere 9.0
2619 Male, age 74, both hemispheres 2.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 101.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 101.9
Samples: 197

Max nTPM: 323.5
Min nTPM: 13.5
Std nTPM: 66.5
Median nTPM: 89.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 323.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 277.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 275.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 267.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 266.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 264.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 257.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 254.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 248.4
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 245.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 237.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 348.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 348.0
FF:10169-103B7 60 years, female 548.2
FF:10153-102I9 76 years, female 147.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 149.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 149.8
Samples: 4

Max nTPM: 180.3
Min nTPM: 109.2
Sample A Female 180.3
Sample B Female 160.1
Sample C Male 109.2
Sample D Male 149.7
Entorhinal cortex
nTPM: 99.2
Samples: 4

Max nTPM: 116.3
Min nTPM: 90.4
Sample A Female 116.3
Sample B Female 90.4
Sample C Male 95.8
Sample D Male 94.4
Subiculum
nTPM: 97.9
Samples: 4

Max nTPM: 122.9
Min nTPM: 83.7
Sample A Female 122.9
Sample B Female 85.6
Sample C Male 99.4
Sample D Male 83.7
Ventral hippocampus
nTPM: 113.6
Samples: 4

Max nTPM: 163.0
Min nTPM: 83.1
Sample A Female 104.0
Sample B Female 83.1
Sample C Male 104.3
Sample D Male 163.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 262.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 158.2
Samples: 4

Max nTPM: 181.9
Min nTPM: 139.4
Sample A Male 150.6
Sample B Male 139.4
Sample C Female 160.9
Sample D Female 181.9
Hippocampal formation
nTPM: 262.5
Samples: 4

Max nTPM: 302.1
Min nTPM: 218.9
Sample A Male 234.5
Sample B Male 294.3
Sample C Female 302.1
Sample D Female 218.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 21.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 21.7
69059954 Antisense, RP_050317_04_G02, Mouse strain C57BL/6J (56 days, male) 21.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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