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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:367.9 nTPM
HPA:367.9 nTPM
GTEx:195.3 nTPM
FANTOM5:1414.9 Scaled Tags Per Million
Pig:468.0 nTPM
Mouse:178.9 nTPM
Allen mouse:10.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 367.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 266.9
1870 Female, age 42, unknown 382.9
1830 Male, age 51, unknown 370.9
1833 Male, age 53, unknown 359.5
2411 Female, age 72, unknown 307.6
2019 Male, age 18, unknown 288.1
2828 Female, age 72, unknown 250.1
1827 Male, age 72, unknown 195.6
2666 Male, age 74, left hemisphere 189.7
2219 Male, age 76, both hemispheres 175.8
2586 Male, age 75, left hemisphere 148.6
Dorsal raphe nucleus
nTPM: 206.9
2750 Male, age 76, both hemispheres 326.1
2016 Female, age 72, unknown 259.8
1828 Male, age 53, unknown 212.1
2047 Male, age 72, unknown 124.8
2298 Female, age 72, unknown 111.8
Inferior colliculus
nTPM: 209.9
1848 Female, age 42, unknown 228.0
2849 Male, age 72, unknown 222.9
1890 Male, age 53, unknown 211.0
2097 Female, age 72, unknown 177.6
Median raphe nucleus
nTPM: 200.3
2220 Male, age 76, midline 200.3
Pedunculopontine tegmental nucleus
nTPM: 275.8
2338 Male, age 61, both hemispheres 337.3
2334 Male, age 80, both hemispheres 275.2
1921 Female, age 85, both hemispheres 215.0
Periaquaductal grey, anterior
nTPM: 136.9
2502 Female, age 75, unknown 155.9
1947 Male, age 18, unknown 152.3
1795 Male, age 51, unknown 102.5
Periaquaductal grey, dorsal
nTPM: 186.2
2850 Male, age 76, both hemispheres 260.6
2464 Female, age 72, unknown 205.5
1831 Male, age 72, unknown 164.5
1840 Male, age 53, unknown 114.2
Periaquaductal grey, lateral
nTPM: 187.4
2140 Male, age 76, both hemispheres 214.8
2053 Male, age 18, unknown 184.5
2272 Male, age 74, both hemispheres 162.8
Pretectal area
nTPM: 185.3
2316 Male, age 76, right hemisphere 266.5
1815 Male, age 53, unknown 248.6
2667 Female, age 75, unknown 231.2
1817 Female, age 42, unknown 199.2
2825 Male, age 18, unknown 192.8
2407 Male, age 75, both hemispheres 189.1
2273 Male, age 74, both hemispheres 174.3
2224 Female, age 72, unknown 173.2
2007 Male, age 72, unknown 145.5
1944 Female, age 72, unknown 130.1
1816 Male, age 51, unknown 88.3
Red nucleus
nTPM: 367.9
1865 Male, age 51, unknown 468.2
1904 Male, age 53, unknown 452.6
1954 Female, age 42, unknown 433.2
1821 Female, age 72, unknown 427.5
2823 Male, age 76, right hemisphere 411.8
2227 Male, age 72, unknown 410.7
2503 Female, age 72, unknown 402.5
2769 Male, age 72, unknown 401.3
2785 Male, age 18, unknown 337.1
2725 Female, age 75, unknown 260.0
2588 Male, age 74, left hemisphere 243.5
2584 Male, age 75, left hemisphere 166.0
Substantia nigra
nTPM: 210.1
2699 Male, age 18, unknown 309.3
2409 Female, age 72, unknown 265.0
2583 Male, age 75, right hemisphere 231.3
1851 Male, age 51, unknown 225.1
1889 Female, age 72, unknown 219.5
2241 Male, age 72, unknown 202.7
2590 Female, age 75, unknown 201.3
1941 Male, age 53, unknown 162.6
1916 Female, age 42, unknown 152.3
2665 Male, age 74, both hemispheres 131.3
Superior colliculus
nTPM: 230.0
1913 Female, age 42, unknown 388.6
1995 Male, age 72, unknown 384.8
1895 Male, age 76, right hemisphere 279.8
1839 Male, age 51, unknown 243.8
2587 Male, age 74, left hemisphere 238.9
2668 Female, age 75, unknown 219.2
1796 Male, age 53, unknown 161.6
2087 Female, age 72, unknown 149.7
2664 Male, age 75, both hemispheres 127.6
2261 Male, age 18, unknown 105.8
Ventral tegmental area
nTPM: 230.0
2223 Female, age 72, unknown 334.0
2410 Female, age 72, unknown 245.2
2218 Male, age 76, both hemispheres 216.0
1942 Male, age 51, unknown 200.2
2021 Male, age 53, unknown 195.8
1915 Female, age 42, unknown 188.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 195.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 195.3
Samples: 139

Max nTPM: 370.8
Min nTPM: 54.9
Std nTPM: 63.8
Median nTPM: 183.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 370.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 369.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 342.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 325.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 325.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 324.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 321.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 319.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 316.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 310.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 310.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1414.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1414.9
FF:10158-103A5 76 years, female 1414.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 468.0
Pig sample Sample description nTPM
Midbrain
nTPM: 468.1
Samples: 4

Max nTPM: 755.1
Min nTPM: 301.8
Sample A Female 755.1
Sample B Female 495.8
Sample C Male 319.5
Sample D Male 301.8
Periaqueductal gray
nTPM: 378.2
Samples: 3

Max nTPM: 429.6
Min nTPM: 323.7
Sample B Female 429.6
Sample C Male 323.7
Sample D Male 381.2
Substantia nigra
nTPM: 432.4
Samples: 4

Max nTPM: 582.5
Min nTPM: 334.6
Sample A Female 430.5
Sample B Female 334.6
Sample C Male 381.9
Sample D Male 582.5
Superior colliculi
nTPM: 332.8
Samples: 4

Max nTPM: 401.9
Min nTPM: 194.3
Sample A Female 371.3
Sample B Female 194.3
Sample C Male 363.5
Sample D Male 401.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 178.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 178.9
Samples: 4

Max nTPM: 188.3
Min nTPM: 168.5
Sample A Male 168.5
Sample B Male 178.0
Sample C Female 188.3
Sample D Female 180.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.4
1151 Antisense, RP_Baylor_102604, Mouse strain C57BL/6J (56 days, male) 15.5
68797858 Antisense, RP_050215_01_C08, Mouse strain C57BL/6J (56 days, male) 13.3
73635471 Antisense, RP_051130_02_F07, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.