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DNPH1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:45.1 nTPM
HPA:45.1 nTPM
GTEx:113.3 nTPM
FANTOM5:40.7 Scaled Tags Per Million
Pig:10.7 nTPM
Mouse:5.2 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA029675Antibody HPA029676
Glial cells Not detectedMedium
Neuronal cells MediumMedium




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 45.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 44.2
1857 Female, age 85, left hemisphere 48.5
2290 Female, age 72, unknown 47.3
1854 Male, age 80, left hemisphere 45.7
2846 Female, age 79, unknown 45.3
2481 Female, age 94, left hemisphere 44.3
1781 Male, age 74, unknown 41.2
2289 Male, age 61, right hemisphere 40.7
2288 Male, age 75, left hemisphere 40.4
Claustrum
nTPM: 38.5
2198 Male, age 80, both hemispheres 41.4
2491 Male, age 75, both hemispheres 41.0
2196 Female, age 79, unknown 40.0
1956 Male, age 74, unknown 39.9
2568 Male, age 61, both hemispheres 38.3
2292 Female, age 85, both hemispheres 37.0
2284 Female, age 91, both hemispheres 36.4
2392 Female, age 94, both hemispheres 36.2
2645 Female, age 72, unknown 36.1
Globus pallidus, externus
nTPM: 43.6
1996 Male, age 80, right hemisphere 47.4
2646 Male, age 61, right hemisphere 45.2
2772 Female, age 79, unknown 45.1
2395 Male, age 75, both hemispheres 40.5
2567 Female, age 72, unknown 39.9
Globus pallidus, internus
nTPM: 41.1
2037 Male, age 80, right hemisphere 44.8
2483 Female, age 94, right hemisphere 44.2
2287 Male, age 75, right hemisphere 43.9
1818 Male, age 74, unknown 40.0
2778 Female, age 91, both hemispheres 40.0
2566 Female, age 72, unknown 38.1
2111 Female, age 85, right hemisphere 36.5
Nucleus accumbens
nTPM: 45.1
1856 Female, age 91, right hemisphere 48.6
1806 Female, age 85, left hemisphere 48.1
2698 Female, age 72, unknown 47.2
1783 Male, age 74, unknown 47.0
2824 Male, age 61, right hemisphere 45.4
2732 Male, age 80, right hemisphere 44.2
2286 Male, age 75, left hemisphere 42.5
2391 Female, age 94, left hemisphere 38.0
Nucleus basalis of Meynert
nTPM: 42.0
2569 Male, age 61, both hemispheres 43.9
2484 Female, age 94, left hemisphere 43.0
2393 Male, age 80, right hemisphere 41.9
2821 Male, age 75, both hemispheres 39.1
Nucleus of the diagonal band
nTPM: 43.3
1979 Male, age 74, unknown 46.7
1812 Female, age 91, both hemispheres 45.7
2775 Male, age 80, right hemisphere 43.2
2195 Female, age 85, both hemispheres 42.5
2029 Male, age 61, right hemisphere 38.4
Olfactory tubercle
nTPM: 41.2
1998 Female, age 91, both hemispheres 43.0
1846 Male, age 80, right hemisphere 42.1
2487 Female, age 94, left hemisphere 40.4
2856 Male, age 75, right hemisphere 39.3
Putamen
nTPM: 42.6
1838 Male, age 80, right hemisphere 47.1
1937 Female, age 91, right hemisphere 43.9
2466 Female, age 79, unknown 43.7
2489 Female, age 72, unknown 41.4
2482 Female, age 94, left hemisphere 41.2
1829 Male, age 74, unknown 40.3
2647 Male, age 75, left hemisphere 40.3
Septal nuclei
nTPM: 41.6
1960 Male, age 74, unknown 45.2
2059 Female, age 85, both hemispheres 43.8
2031 Female, age 72, unknown 43.1
2009 Female, age 91, both hemispheres 41.7
2199 Male, age 80, right hemisphere 40.7
2629 Female, age 94, right hemisphere 39.3
2394 Male, age 61, left hemisphere 37.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 113.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 93.1
Samples: 246

Max nTPM: 207.3
Min nTPM: 29.9
Std nTPM: 27.5
Median nTPM: 87.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 207.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 200.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 184.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 180.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 177.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 175.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 161.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 156.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 156.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 155.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 151.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 113.3
Samples: 246

Max nTPM: 265.4
Min nTPM: 31.7
Std nTPM: 33.1
Median nTPM: 112.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 265.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 222.3
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 208.3
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 195.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 190.0
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 188.0
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 184.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 182.2
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 172.2
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 171.1
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 168.2
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Brain - Putamen (basal ganglia)
Average nTPM: 92.7
Samples: 205

Max nTPM: 176.0
Min nTPM: 40.6
Std nTPM: 24.5
Median nTPM: 89.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 176.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 172.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 162.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 157.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 151.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 148.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 143.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 142.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 136.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 135.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 132.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 40.7
FF:10164-103B2 76 years, female 40.7
Globus pallidus
Scaled Tags Per Million: 15.0
FF:10161-103A8 76 years, female 22.2
FF:10175-103C4 60 years, female 7.8
Nucleus accumbens
Scaled Tags Per Million: 33.2
FF:10037-101F1 23-56 years, mixed 33.2
Putamen
Scaled Tags Per Million: 40.0
FF:10176-103C5 60 years, female 40.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.7
Pig sample Sample description nTPM
Caudate
nTPM: 6.2
Samples: 4

Max nTPM: 7.1
Min nTPM: 4.7
Sample A Female 5.9
Sample B Female 7.1
Sample C Male 7.1
Sample D Male 4.7
Putamen
nTPM: 7.1
Samples: 4

Max nTPM: 9.3
Min nTPM: 4.3
Sample A Female 7.8
Sample B Female 4.3
Sample C Male 9.3
Sample D Male 7.0
Septum
nTPM: 10.7
Samples: 4

Max nTPM: 14.8
Min nTPM: 6.7
Sample A Female 10.9
Sample B Female 6.7
Sample C Male 14.8
Sample D Male 10.5
Ventral pallidum
nTPM: 7.7
Samples: 4

Max nTPM: 9.8
Min nTPM: 5.8
Sample A Female 5.8
Sample B Female 8.5
Sample C Male 9.8
Sample D Male 6.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.6
Samples: 4

Max nTPM: 6.2
Min nTPM: 3.0
Sample A Male 6.2
Sample B Male 5.4
Sample C Female 3.8
Sample D Female 3.0
Septum
nTPM: 4.9
Samples: 4

Max nTPM: 5.3
Min nTPM: 4.0
Sample A Male 5.3
Sample B Male 5.3
Sample C Female 5.1
Sample D Female 4.0
Ventral forebrain
nTPM: 5.2
Samples: 4

Max nTPM: 5.9
Min nTPM: 3.7
Sample A Male 5.9
Sample B Male 3.7
Sample C Female 5.8
Sample D Female 5.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
69262317 Antisense, RP_050303_01_H09, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
69262317 Antisense, RP_050303_01_H09, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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