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DNPH1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.5 nTPM
HPA:42.5 nTPM
GTEx:75.5 nTPM
FANTOM5:17.1 Scaled Tags Per Million
Pig:15.2 nTPM
Mouse:3.6 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.1
2586 Male, age 75, left hemisphere 43.3
2828 Female, age 72, unknown 42.1
1827 Male, age 72, unknown 39.4
1870 Female, age 42, unknown 39.1
2666 Male, age 74, left hemisphere 37.3
1830 Male, age 51, unknown 36.2
1833 Male, age 53, unknown 36.1
2219 Male, age 76, both hemispheres 35.9
2411 Female, age 72, unknown 35.7
2019 Male, age 18, unknown 35.4
Dorsal raphe nucleus
nTPM: 41.9
2298 Female, age 72, unknown 46.2
2016 Female, age 72, unknown 43.9
1828 Male, age 53, unknown 41.4
2047 Male, age 72, unknown 40.2
2750 Male, age 76, both hemispheres 37.9
Inferior colliculus
nTPM: 40.4
1890 Male, age 53, unknown 41.4
2097 Female, age 72, unknown 41.1
2849 Male, age 72, unknown 40.3
1848 Female, age 42, unknown 38.9
Median raphe nucleus
nTPM: 37.1
2220 Male, age 76, midline 37.1
Pedunculopontine tegmental nucleus
nTPM: 37.0
1921 Female, age 85, both hemispheres 37.9
2334 Male, age 80, both hemispheres 37.4
2338 Male, age 61, both hemispheres 35.8
Periaquaductal grey, anterior
nTPM: 40.6
1795 Male, age 51, unknown 43.5
2502 Female, age 75, unknown 40.6
1947 Male, age 18, unknown 37.7
Periaquaductal grey, dorsal
nTPM: 41.5
1840 Male, age 53, unknown 44.6
2850 Male, age 76, both hemispheres 43.4
1831 Male, age 72, unknown 40.9
2464 Female, age 72, unknown 37.3
Periaquaductal grey, lateral
nTPM: 42.5
2272 Male, age 74, both hemispheres 43.5
2053 Male, age 18, unknown 42.5
2140 Male, age 76, both hemispheres 41.6
Pretectal area
nTPM: 40.7
2273 Male, age 74, both hemispheres 47.3
2667 Female, age 75, unknown 43.7
2825 Male, age 18, unknown 43.0
2224 Female, age 72, unknown 42.5
2407 Male, age 75, both hemispheres 40.5
1816 Male, age 51, unknown 39.3
1815 Male, age 53, unknown 38.5
1944 Female, age 72, unknown 38.5
1817 Female, age 42, unknown 38.1
2007 Male, age 72, unknown 38.0
2316 Male, age 76, right hemisphere 38.0
Red nucleus
nTPM: 39.4
2503 Female, age 72, unknown 40.9
2725 Female, age 75, unknown 40.7
1821 Female, age 72, unknown 40.5
1954 Female, age 42, unknown 40.3
2227 Male, age 72, unknown 40.1
2769 Male, age 72, unknown 39.8
1904 Male, age 53, unknown 39.0
2584 Male, age 75, left hemisphere 38.8
1865 Male, age 51, unknown 38.4
2588 Male, age 74, left hemisphere 38.4
2785 Male, age 18, unknown 38.4
2823 Male, age 76, right hemisphere 37.5
Substantia nigra
nTPM: 39.7
2699 Male, age 18, unknown 45.0
1916 Female, age 42, unknown 43.1
1851 Male, age 51, unknown 41.4
2583 Male, age 75, right hemisphere 39.4
2241 Male, age 72, unknown 38.6
2665 Male, age 74, both hemispheres 38.5
2409 Female, age 72, unknown 38.4
1941 Male, age 53, unknown 38.1
1889 Female, age 72, unknown 37.8
2590 Female, age 75, unknown 36.4
Superior colliculus
nTPM: 39.8
1796 Male, age 53, unknown 42.2
1995 Male, age 72, unknown 42.0
2664 Male, age 75, both hemispheres 41.2
2587 Male, age 74, left hemisphere 40.4
1913 Female, age 42, unknown 39.7
2261 Male, age 18, unknown 39.7
2668 Female, age 75, unknown 38.9
2087 Female, age 72, unknown 38.7
1839 Male, age 51, unknown 38.3
1895 Male, age 76, right hemisphere 36.5
Ventral tegmental area
nTPM: 40.4
1915 Female, age 42, unknown 45.9
1942 Male, age 51, unknown 41.1
2021 Male, age 53, unknown 40.2
2223 Female, age 72, unknown 38.8
2410 Female, age 72, unknown 38.3
2218 Male, age 76, both hemispheres 38.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 75.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.5
Samples: 139

Max nTPM: 156.1
Min nTPM: 25.4
Std nTPM: 24.5
Median nTPM: 73.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 156.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 150.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 147.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 139.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 128.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 124.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 122.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 117.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 112.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 109.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 109.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.1
FF:10158-103A5 76 years, female 17.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.2
Pig sample Sample description nTPM
Midbrain
nTPM: 15.2
Samples: 4

Max nTPM: 28.6
Min nTPM: 8.2
Sample A Female 28.6
Sample B Female 13.4
Sample C Male 8.2
Sample D Male 10.4
Periaqueductal gray
nTPM: 12.7
Samples: 3

Max nTPM: 15.8
Min nTPM: 10.2
Sample B Female 10.2
Sample C Male 15.8
Sample D Male 12.1
Substantia nigra
nTPM: 14.4
Samples: 4

Max nTPM: 19.1
Min nTPM: 10.9
Sample A Female 19.1
Sample B Female 10.9
Sample C Male 15.3
Sample D Male 12.3
Superior colliculi
nTPM: 11.9
Samples: 4

Max nTPM: 15.9
Min nTPM: 10.0
Sample A Female 15.9
Sample B Female 11.0
Sample C Male 10.0
Sample D Male 10.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.6
Samples: 4

Max nTPM: 4.2
Min nTPM: 3.3
Sample A Male 4.2
Sample B Male 3.4
Sample C Female 3.3
Sample D Female 3.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69262317 Antisense, RP_050303_01_H09, Mouse strain C57BL/6J (56 days, male) 0.1

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