ABOUTMENU
HELP
NEWS
RNF130
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:94.6 nTPM
HPA:94.6 nTPM
GTEx:58.3 nTPM
FANTOM5:278.9 Scaled Tags Per Million
Mouse:88.8 nTPM
Allen mouse:8.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 94.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.8
2411 Female, age 72, unknown 100.0
1830 Male, age 51, unknown 95.8
1870 Female, age 42, unknown 95.1
2019 Male, age 18, unknown 93.8
1833 Male, age 53, unknown 93.5
2219 Male, age 76, both hemispheres 81.3
2828 Female, age 72, unknown 81.0
2586 Male, age 75, left hemisphere 77.2
1827 Male, age 72, unknown 76.1
2666 Male, age 74, left hemisphere 73.8
Dorsal raphe nucleus
nTPM: 85.0
2750 Male, age 76, both hemispheres 101.2
2016 Female, age 72, unknown 83.1
2298 Female, age 72, unknown 82.1
1828 Male, age 53, unknown 81.5
2047 Male, age 72, unknown 77.1
Inferior colliculus
nTPM: 80.1
1848 Female, age 42, unknown 82.2
2097 Female, age 72, unknown 80.3
2849 Male, age 72, unknown 79.6
1890 Male, age 53, unknown 78.5
Median raphe nucleus
nTPM: 82.3
2220 Male, age 76, midline 82.3
Pedunculopontine tegmental nucleus
nTPM: 87.4
2338 Male, age 61, both hemispheres 92.0
2334 Male, age 80, both hemispheres 90.4
1921 Female, age 85, both hemispheres 79.9
Periaquaductal grey, anterior
nTPM: 73.0
2502 Female, age 75, unknown 76.8
1947 Male, age 18, unknown 71.5
1795 Male, age 51, unknown 70.7
Periaquaductal grey, dorsal
nTPM: 75.7
2464 Female, age 72, unknown 83.5
1831 Male, age 72, unknown 74.8
1840 Male, age 53, unknown 72.8
2850 Male, age 76, both hemispheres 71.7
Periaquaductal grey, lateral
nTPM: 77.1
2272 Male, age 74, both hemispheres 80.8
2053 Male, age 18, unknown 79.1
2140 Male, age 76, both hemispheres 71.5
Pretectal area
nTPM: 77.5
2316 Male, age 76, right hemisphere 85.1
1815 Male, age 53, unknown 81.6
2825 Male, age 18, unknown 81.2
2273 Male, age 74, both hemispheres 80.4
1817 Female, age 42, unknown 79.6
2224 Female, age 72, unknown 79.3
2407 Male, age 75, both hemispheres 77.3
2007 Male, age 72, unknown 76.6
2667 Female, age 75, unknown 73.6
1944 Female, age 72, unknown 68.7
1816 Male, age 51, unknown 68.6
Red nucleus
nTPM: 94.6
1865 Male, age 51, unknown 106.6
1904 Male, age 53, unknown 105.1
1821 Female, age 72, unknown 100.8
2227 Male, age 72, unknown 99.2
2769 Male, age 72, unknown 98.9
2823 Male, age 76, right hemisphere 97.6
2503 Female, age 72, unknown 96.9
1954 Female, age 42, unknown 96.3
2785 Male, age 18, unknown 95.4
2725 Female, age 75, unknown 81.2
2588 Male, age 74, left hemisphere 79.6
2584 Male, age 75, left hemisphere 77.4
Substantia nigra
nTPM: 81.1
2590 Female, age 75, unknown 87.7
2409 Female, age 72, unknown 84.9
2583 Male, age 75, right hemisphere 84.5
2241 Male, age 72, unknown 83.4
1851 Male, age 51, unknown 83.0
2665 Male, age 74, both hemispheres 78.6
1889 Female, age 72, unknown 78.5
2699 Male, age 18, unknown 78.2
1941 Male, age 53, unknown 77.9
1916 Female, age 42, unknown 74.5
Superior colliculus
nTPM: 83.6
1913 Female, age 42, unknown 98.9
1995 Male, age 72, unknown 92.8
2587 Male, age 74, left hemisphere 88.7
2668 Female, age 75, unknown 86.8
1895 Male, age 76, right hemisphere 86.1
1839 Male, age 51, unknown 84.8
1796 Male, age 53, unknown 76.8
2087 Female, age 72, unknown 75.5
2261 Male, age 18, unknown 73.5
2664 Male, age 75, both hemispheres 72.3
Ventral tegmental area
nTPM: 83.8
2223 Female, age 72, unknown 97.4
2410 Female, age 72, unknown 91.8
2021 Male, age 53, unknown 81.1
1915 Female, age 42, unknown 78.2
2218 Male, age 76, both hemispheres 77.8
1942 Male, age 51, unknown 76.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.3
Samples: 139

Max nTPM: 129.5
Min nTPM: 26.6
Std nTPM: 22.0
Median nTPM: 51.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 129.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 121.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 118.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 113.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 111.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 111.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 107.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 97.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 94.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 93.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 90.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 278.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 278.9
FF:10158-103A5 76 years, female 278.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 88.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.8
Samples: 4

Max nTPM: 92.0
Min nTPM: 84.6
Sample A Male 84.6
Sample B Male 90.2
Sample C Female 92.0
Sample D Female 88.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.0
68637868 Antisense, RP_050126_01_G07, Mouse strain C57BL/6J (56 days, male) 8.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.