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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.4 nTPM
HPA:23.4 nTPM
GTEx:10.6 nTPM
FANTOM5:101.2 Scaled Tags Per Million
Pig:42.0 nTPM
Mouse:8.2 nTPM
Allen mouse:3.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 23.4
Sample id Sample description nTPM
Hippocampus
nTPM: 20.7
1911 Female, age 85, right hemisphere 27.3
2529 Female, age 94, left hemisphere 24.9
1898 Male, age 80, left hemisphere 24.0
2148 Female, age 91, left hemisphere 22.5
1855 Male, age 76, left hemisphere 16.4
2621 Female, age 67, right hemisphere 8.9
Dentate gyrus
nTPM: 18.6
2528 Male, age 74, both hemispheres 33.1
2530 Female, age 94, left hemisphere 17.5
2246 Female, age 85, both hemispheres 17.0
1927 Female, age 91, both hemispheres 16.3
2010 Male, age 76, both hemispheres 15.9
2531 Female, age 67, both hemispheres 11.8
Entorhinal gyrus
nTPM: 19.3
2117 Female, age 91, right hemisphere 34.9
1938 Female, age 85, left hemisphere 19.6
2764 Male, age 80, right hemisphere 18.7
2686 Male, age 75, right hemisphere 17.6
1787 Male, age 76, left hemisphere 16.8
2613 Female, age 94, left hemisphere 8.2
Hippocampus, CA1
nTPM: 17.8
2527 Male, age 74, both hemispheres 25.3
1873 Female, age 85, both hemispheres 24.9
2082 Female, age 91, right hemisphere 21.3
2045 Male, age 76, both hemispheres 9.2
2749 Male, age 80, left hemisphere 8.3
Hippocampus, CA2
nTPM: 20.9
2249 Male, age 74, both hemispheres 31.0
2113 Female, age 91, right hemisphere 24.3
1940 Female, age 85, left hemisphere 22.3
1963 Male, age 80, left hemisphere 20.1
2437 Female, age 94, left hemisphere 17.3
1892 Male, age 76, both hemispheres 10.2
Hippocampus, CA3
nTPM: 14.0
1891 Female, age 85, both hemispheres 29.9
2436 Male, age 74, both hemispheres 14.9
2861 Female, age 67, both hemispheres 14.1
2620 Female, age 94, left hemisphere 10.3
1867 Male, age 76, both hemispheres 8.9
2137 Male, age 80, left hemisphere 5.7
Parahippocampal cortex
nTPM: 16.7
2692 Male, age 74, both hemispheres 25.8
1933 Female, age 85, both hemispheres 22.3
1990 Female, age 91, right hemisphere 22.1
1850 Male, age 80, both hemispheres 15.4
2250 Female, age 67, right hemisphere 15.1
2622 Female, age 67, right hemisphere 14.3
2245 Female, age 91, both hemispheres 13.7
2693 Female, age 94, both hemispheres 13.2
2532 Female, age 72, left hemisphere 13.1
2018 Male, age 76, both hemispheres 12.2
Perirhinal gyrus
nTPM: 13.3
1847 Female, age 91, left hemisphere 14.2
2521 Female, age 94, right hemisphere 14.2
1841 Female, age 85, right hemisphere 13.2
1794 Male, age 80, right hemisphere 13.0
2848 Male, age 76, right hemisphere 12.2
Subiculum
nTPM: 23.4
2729 Female, age 91, right hemisphere 30.5
1901 Male, age 80, both hemispheres 25.3
2619 Male, age 74, both hemispheres 24.6
1977 Female, age 85, both hemispheres 22.9
2042 Male, age 76, both hemispheres 20.9
2438 Female, age 94, left hemisphere 16.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.6
Samples: 197

Max nTPM: 32.5
Min nTPM: 4.1
Std nTPM: 4.4
Median nTPM: 9.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 32.5
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 25.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 25.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 23.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 21.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 20.1
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 19.7
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 19.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 19.6
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 19.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 18.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 101.2
FF:10153-102I9 76 years, female 127.2
FF:10169-103B7 60 years, female 75.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 42.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 42.0
Samples: 4

Max nTPM: 48.0
Min nTPM: 36.5
Sample A Female 48.0
Sample B Female 42.5
Sample C Male 40.8
Sample D Male 36.5
Entorhinal cortex
nTPM: 33.4
Samples: 4

Max nTPM: 42.3
Min nTPM: 27.6
Sample A Female 32.8
Sample B Female 42.3
Sample C Male 31.0
Sample D Male 27.6
Subiculum
nTPM: 30.7
Samples: 4

Max nTPM: 40.2
Min nTPM: 26.2
Sample A Female 40.2
Sample B Female 29.6
Sample C Male 26.9
Sample D Male 26.2
Ventral hippocampus
nTPM: 33.7
Samples: 4

Max nTPM: 42.3
Min nTPM: 28.2
Sample A Female 32.1
Sample B Female 32.2
Sample C Male 28.2
Sample D Male 42.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 8.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.2
Samples: 4

Max nTPM: 9.3
Min nTPM: 7.4
Sample A Male 8.1
Sample B Male 7.4
Sample C Female 7.8
Sample D Female 9.3
Hippocampal formation
nTPM: 7.8
Samples: 4

Max nTPM: 9.2
Min nTPM: 6.3
Sample A Male 6.3
Sample B Male 9.2
Sample C Female 9.2
Sample D Female 6.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.8
71016573 Antisense, RP_050725_03_A01, Mouse strain C57BL/6J (56 days, male) 5.1
68631966 Antisense, RP_050125_01_D11, Mouse strain C57BL/6J (56 days, male) 2.6

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