Cell line - TRAPPC13 - The Human Protein Atlas

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	TRAPPC13
Gene descriptionⁱ Full gene name according to HGNC.	Trafficking protein particle complex 13
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	4

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Cell line expression clusterⁱ The RNA data was used to cluster genes according to their expression across cell lines. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity. Read more	Non-specific - Cell cycle regulation (mainly)
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines. Read more	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines. Read more	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

CELL LINESⁱ

Organ

Expression

Alphabetical

EXPRESSION CLUSTERING & CORRELATIONⁱ

TRAPPC13 is part of cluster 26 Non-specific - Cell cycle regulation with confidenceⁱ 0.91
1622 genes in cluster

Go to interactive expression cluster page

15 nearest neighbours based on cell line RNA expression

Neighbourⁱ Gene name according to HGNC.	Descriptionⁱ Gene description according to HGNC.	Correlationⁱ Correlation between the selected gene and neighboring gene. Correlation is calculated as Spearman correlation in PCA space based on the RNA-seq expression data. Read more	Clusterⁱ ID of the expression cluster of the neighboring gene. Read more
GFM2	GTP dependent ribosome recycling factor mitochondrial 2	0.7617	4
SCAMP1	Secretory carrier membrane protein 1	0.7079	23
CWC27	CWC27 spliceosome associated cyclophilin	0.6941	26
SKP1	S-phase kinase associated protein 1	0.6891	4
DHFR	Dihydrofolate reductase	0.6482	26
RAD17	RAD17 checkpoint clamp loader component	0.6437	26
MSH3	MutS homolog 3	0.6423	26
ERBIN	Erbb2 interacting protein	0.6397	4
UTP15	UTP15 small subunit processome component	0.6221	26
ERCC8	ERCC excision repair 8, CSA ubiquitin ligase complex subunit	0.6075	26
RFC1	Replication factor C subunit 1	0.6067	26
NDUFS4	NADH:ubiquinone oxidoreductase subunit S4	0.6000	30
DHX29	DExH-box helicase 29	0.5960	41
CDC25C	Cell division cycle 25C	0.5939	4
BBX	BBX high mobility group box domain containing	0.5937	30