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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:40.3 nTPM
HPA:40.3 nTPM
GTEx:34.1 nTPM
FANTOM5:45.6 Scaled Tags Per Million
Pig:28.1 nTPM
Mouse:31.9 nTPM
Allen mouse:4.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038016Antibody HPA038017
Glial cells Not detectedNot detected
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 40.3
Sample id Sample description nTPM
Hippocampus
nTPM: 39.8
2148 Female, age 91, left hemisphere 44.0
1898 Male, age 80, left hemisphere 41.7
2529 Female, age 94, left hemisphere 40.1
2621 Female, age 67, right hemisphere 38.2
1855 Male, age 76, left hemisphere 37.3
1911 Female, age 85, right hemisphere 37.3
Dentate gyrus
nTPM: 37.5
2246 Female, age 85, both hemispheres 39.6
2528 Male, age 74, both hemispheres 39.1
2530 Female, age 94, left hemisphere 38.9
2010 Male, age 76, both hemispheres 38.3
2531 Female, age 67, both hemispheres 34.9
1927 Female, age 91, both hemispheres 34.5
Entorhinal gyrus
nTPM: 34.9
2117 Female, age 91, right hemisphere 38.9
2764 Male, age 80, right hemisphere 35.3
1938 Female, age 85, left hemisphere 34.4
2613 Female, age 94, left hemisphere 34.0
2686 Male, age 75, right hemisphere 34.0
1787 Male, age 76, left hemisphere 33.0
Hippocampus, CA1
nTPM: 40.3
2527 Male, age 74, both hemispheres 42.8
2749 Male, age 80, left hemisphere 42.4
2082 Female, age 91, right hemisphere 41.7
1873 Female, age 85, both hemispheres 41.3
2045 Male, age 76, both hemispheres 33.3
Hippocampus, CA2
nTPM: 37.7
1963 Male, age 80, left hemisphere 46.0
2113 Female, age 91, right hemisphere 39.1
2249 Male, age 74, both hemispheres 38.5
1940 Female, age 85, left hemisphere 35.5
2437 Female, age 94, left hemisphere 34.4
1892 Male, age 76, both hemispheres 32.9
Hippocampus, CA3
nTPM: 37.3
2861 Female, age 67, both hemispheres 43.1
2436 Male, age 74, both hemispheres 42.0
2137 Male, age 80, left hemisphere 39.5
1891 Female, age 85, both hemispheres 34.6
2620 Female, age 94, left hemisphere 33.2
1867 Male, age 76, both hemispheres 31.6
Parahippocampal cortex
nTPM: 35.4
2692 Male, age 74, both hemispheres 38.4
2245 Female, age 91, both hemispheres 37.7
2622 Female, age 67, right hemisphere 37.1
1933 Female, age 85, both hemispheres 36.4
2693 Female, age 94, both hemispheres 35.2
2250 Female, age 67, right hemisphere 34.5
1850 Male, age 80, both hemispheres 34.4
2018 Male, age 76, both hemispheres 33.8
2532 Female, age 72, left hemisphere 33.8
1990 Female, age 91, right hemisphere 33.1
Perirhinal gyrus
nTPM: 35.1
1794 Male, age 80, right hemisphere 37.0
2521 Female, age 94, right hemisphere 36.2
1847 Female, age 91, left hemisphere 35.8
1841 Female, age 85, right hemisphere 35.7
2848 Male, age 76, right hemisphere 30.7
Subiculum
nTPM: 36.5
2729 Female, age 91, right hemisphere 42.2
2619 Male, age 74, both hemispheres 37.3
2042 Male, age 76, both hemispheres 35.4
2438 Female, age 94, left hemisphere 35.3
1901 Male, age 80, both hemispheres 35.0
1977 Female, age 85, both hemispheres 33.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 34.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 34.1
Samples: 197

Max nTPM: 72.8
Min nTPM: 12.7
Std nTPM: 9.5
Median nTPM: 33.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 72.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 63.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 62.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 58.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 55.0
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 54.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 53.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 52.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 50.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 50.2
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 48.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 45.6
FF:10153-102I9 76 years, female 61.0
FF:10169-103B7 60 years, female 30.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 28.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 25.8
Samples: 4

Max nTPM: 31.2
Min nTPM: 18.9
Sample A Female 31.2
Sample B Female 27.3
Sample C Male 25.8
Sample D Male 18.9
Entorhinal cortex
nTPM: 28.1
Samples: 4

Max nTPM: 31.3
Min nTPM: 26.0
Sample A Female 27.6
Sample B Female 26.0
Sample C Male 31.3
Sample D Male 27.5
Subiculum
nTPM: 27.4
Samples: 4

Max nTPM: 33.6
Min nTPM: 23.8
Sample A Female 33.6
Sample B Female 27.2
Sample C Male 25.1
Sample D Male 23.8
Ventral hippocampus
nTPM: 27.3
Samples: 4

Max nTPM: 35.4
Min nTPM: 22.8
Sample A Female 23.7
Sample B Female 22.8
Sample C Male 27.1
Sample D Male 35.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 31.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 31.0
Samples: 4

Max nTPM: 32.3
Min nTPM: 30.0
Sample A Male 32.3
Sample B Male 30.5
Sample C Female 30.0
Sample D Female 31.3
Hippocampal formation
nTPM: 31.9
Samples: 4

Max nTPM: 34.9
Min nTPM: 28.5
Sample A Male 28.5
Sample B Male 32.0
Sample C Female 32.1
Sample D Female 34.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.3
75750439 Antisense, RP_060518_04_H01, Mouse strain C57BL/6J (56 days, male) 4.5
71020388 Antisense, RP_050725_01_A08, Mouse strain C57BL/6J (56 days, male) 4.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.