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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.0 nTPM
HPA:47.0 nTPM
GTEx:39.8 nTPM
FANTOM5:35.2 Scaled Tags Per Million
Pig:19.5 nTPM
Mouse:19.0 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.7
2586 Male, age 75, left hemisphere 56.1
2828 Female, age 72, unknown 50.3
2666 Male, age 74, left hemisphere 44.7
1827 Male, age 72, unknown 44.1
2019 Male, age 18, unknown 43.0
1870 Female, age 42, unknown 37.0
2411 Female, age 72, unknown 37.0
1833 Male, age 53, unknown 36.3
1830 Male, age 51, unknown 35.4
2219 Male, age 76, both hemispheres 33.6
Dorsal raphe nucleus
nTPM: 45.0
2016 Female, age 72, unknown 53.1
1828 Male, age 53, unknown 49.6
2298 Female, age 72, unknown 44.1
2047 Male, age 72, unknown 42.7
2750 Male, age 76, both hemispheres 35.5
Inferior colliculus
nTPM: 41.9
1848 Female, age 42, unknown 44.8
2849 Male, age 72, unknown 42.8
1890 Male, age 53, unknown 40.9
2097 Female, age 72, unknown 39.0
Median raphe nucleus
nTPM: 34.3
2220 Male, age 76, midline 34.3
Pedunculopontine tegmental nucleus
nTPM: 36.1
1921 Female, age 85, both hemispheres 37.3
2338 Male, age 61, both hemispheres 35.5
2334 Male, age 80, both hemispheres 35.4
Periaquaductal grey, anterior
nTPM: 44.9
1795 Male, age 51, unknown 49.9
2502 Female, age 75, unknown 42.8
1947 Male, age 18, unknown 42.0
Periaquaductal grey, dorsal
nTPM: 47.0
2850 Male, age 76, both hemispheres 53.7
1840 Male, age 53, unknown 48.9
2464 Female, age 72, unknown 44.3
1831 Male, age 72, unknown 41.1
Periaquaductal grey, lateral
nTPM: 45.6
2140 Male, age 76, both hemispheres 49.9
2272 Male, age 74, both hemispheres 43.7
2053 Male, age 18, unknown 43.2
Pretectal area
nTPM: 42.6
1816 Male, age 51, unknown 46.7
2007 Male, age 72, unknown 46.5
1817 Female, age 42, unknown 45.4
1944 Female, age 72, unknown 45.0
1815 Male, age 53, unknown 44.9
2667 Female, age 75, unknown 42.0
2316 Male, age 76, right hemisphere 41.0
2273 Male, age 74, both hemispheres 40.3
2825 Male, age 18, unknown 40.2
2224 Female, age 72, unknown 39.4
2407 Male, age 75, both hemispheres 37.2
Red nucleus
nTPM: 41.1
2725 Female, age 75, unknown 44.9
2588 Male, age 74, left hemisphere 44.6
2503 Female, age 72, unknown 44.3
1954 Female, age 42, unknown 42.3
2227 Male, age 72, unknown 41.5
2785 Male, age 18, unknown 41.2
2769 Male, age 72, unknown 40.8
2823 Male, age 76, right hemisphere 40.8
2584 Male, age 75, left hemisphere 39.9
1821 Female, age 72, unknown 37.9
1865 Male, age 51, unknown 37.6
1904 Male, age 53, unknown 37.5
Substantia nigra
nTPM: 41.2
2665 Male, age 74, both hemispheres 45.0
1916 Female, age 42, unknown 44.5
2699 Male, age 18, unknown 43.2
2583 Male, age 75, right hemisphere 42.1
1889 Female, age 72, unknown 42.0
2590 Female, age 75, unknown 40.0
1851 Male, age 51, unknown 39.5
1941 Male, age 53, unknown 39.0
2409 Female, age 72, unknown 38.8
2241 Male, age 72, unknown 37.7
Superior colliculus
nTPM: 42.5
2664 Male, age 75, both hemispheres 48.7
1796 Male, age 53, unknown 44.8
2261 Male, age 18, unknown 44.7
1995 Male, age 72, unknown 44.5
1839 Male, age 51, unknown 42.2
2087 Female, age 72, unknown 42.2
2668 Female, age 75, unknown 41.8
2587 Male, age 74, left hemisphere 39.6
1913 Female, age 42, unknown 39.2
1895 Male, age 76, right hemisphere 37.1
Ventral tegmental area
nTPM: 39.4
1942 Male, age 51, unknown 43.1
2021 Male, age 53, unknown 40.5
2410 Female, age 72, unknown 39.9
1915 Female, age 42, unknown 39.4
2218 Male, age 76, both hemispheres 38.1
2223 Female, age 72, unknown 35.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.8
Samples: 139

Max nTPM: 92.6
Min nTPM: 9.2
Std nTPM: 17.0
Median nTPM: 37.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 92.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 83.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 82.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 82.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 82.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 79.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 75.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 74.2
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 69.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 69.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 66.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.2
FF:10158-103A5 76 years, female 35.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.5
Pig sample Sample description nTPM
Midbrain
nTPM: 18.9
Samples: 4

Max nTPM: 23.7
Min nTPM: 13.9
Sample A Female 15.0
Sample B Female 13.9
Sample C Male 22.8
Sample D Male 23.7
Periaqueductal gray
nTPM: 16.3
Samples: 3

Max nTPM: 19.1
Min nTPM: 13.5
Sample B Female 16.4
Sample C Male 19.1
Sample D Male 13.5
Substantia nigra
nTPM: 14.5
Samples: 4

Max nTPM: 17.1
Min nTPM: 11.8
Sample A Female 13.8
Sample B Female 11.8
Sample C Male 15.4
Sample D Male 17.1
Superior colliculi
nTPM: 19.5
Samples: 4

Max nTPM: 21.8
Min nTPM: 16.5
Sample A Female 21.8
Sample B Female 16.5
Sample C Male 20.8
Sample D Male 18.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.0
Samples: 4

Max nTPM: 19.7
Min nTPM: 17.9
Sample A Male 19.1
Sample B Male 17.9
Sample C Female 19.7
Sample D Female 19.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
75750439 Antisense, RP_060518_04_H01, Mouse strain C57BL/6J (56 days, male) 1.9
71020388 Antisense, RP_050725_01_A08, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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