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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:43.3 nTPM
HPA:43.3 nTPM
GTEx:52.8 nTPM
FANTOM5:47.2 Scaled Tags Per Million
Pig:33.8 nTPM
Mouse:33.9 nTPM
Allen mouse:2.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA038016Antibody HPA038017
Glial cells Not detectedLow
Neuronal cells MediumMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 42.1
2481 Female, age 94, left hemisphere 47.6
2289 Male, age 61, right hemisphere 45.0
1854 Male, age 80, left hemisphere 43.9
1857 Female, age 85, left hemisphere 43.6
2290 Female, age 72, unknown 43.6
2846 Female, age 79, unknown 38.6
2288 Male, age 75, left hemisphere 38.1
1781 Male, age 74, unknown 36.7
Claustrum
nTPM: 34.0
2198 Male, age 80, both hemispheres 37.0
2645 Female, age 72, unknown 36.2
2284 Female, age 91, both hemispheres 35.9
2568 Male, age 61, both hemispheres 35.3
2196 Female, age 79, unknown 34.4
2491 Male, age 75, both hemispheres 34.1
1956 Male, age 74, unknown 32.8
2392 Female, age 94, both hemispheres 30.4
2292 Female, age 85, both hemispheres 29.6
Globus pallidus, externus
nTPM: 43.3
2646 Male, age 61, right hemisphere 49.9
1996 Male, age 80, right hemisphere 44.9
2567 Female, age 72, unknown 44.2
2772 Female, age 79, unknown 40.1
2395 Male, age 75, both hemispheres 37.5
Globus pallidus, internus
nTPM: 40.7
2483 Female, age 94, right hemisphere 49.4
2037 Male, age 80, right hemisphere 42.5
1818 Male, age 74, unknown 41.8
2287 Male, age 75, right hemisphere 39.9
2566 Female, age 72, unknown 38.4
2111 Female, age 85, right hemisphere 38.2
2778 Female, age 91, both hemispheres 34.5
Nucleus accumbens
nTPM: 38.7
1783 Male, age 74, unknown 41.0
2732 Male, age 80, right hemisphere 40.6
1806 Female, age 85, left hemisphere 39.9
2824 Male, age 61, right hemisphere 38.8
2698 Female, age 72, unknown 38.6
2286 Male, age 75, left hemisphere 38.2
1856 Female, age 91, right hemisphere 37.5
2391 Female, age 94, left hemisphere 35.3
Nucleus basalis of Meynert
nTPM: 41.0
2569 Male, age 61, both hemispheres 54.2
2393 Male, age 80, right hemisphere 42.0
2484 Female, age 94, left hemisphere 36.8
2821 Male, age 75, both hemispheres 31.1
Nucleus of the diagonal band
nTPM: 37.2
1979 Male, age 74, unknown 39.2
1812 Female, age 91, both hemispheres 38.1
2775 Male, age 80, right hemisphere 38.0
2195 Female, age 85, both hemispheres 35.4
2029 Male, age 61, right hemisphere 35.3
Olfactory tubercle
nTPM: 35.5
1846 Male, age 80, right hemisphere 38.9
2856 Male, age 75, right hemisphere 35.6
2487 Female, age 94, left hemisphere 34.5
1998 Female, age 91, both hemispheres 33.1
Putamen
nTPM: 43.2
2647 Male, age 75, left hemisphere 47.9
1838 Male, age 80, right hemisphere 45.9
2489 Female, age 72, unknown 45.4
2482 Female, age 94, left hemisphere 44.4
1829 Male, age 74, unknown 42.8
2466 Female, age 79, unknown 38.7
1937 Female, age 91, right hemisphere 37.6
Septal nuclei
nTPM: 38.3
2199 Male, age 80, right hemisphere 45.3
1960 Male, age 74, unknown 39.4
2059 Female, age 85, both hemispheres 38.8
2009 Female, age 91, both hemispheres 37.5
2394 Male, age 61, left hemisphere 37.0
2629 Female, age 94, right hemisphere 35.9
2031 Female, age 72, unknown 34.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 52.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 52.8
Samples: 246

Max nTPM: 98.6
Min nTPM: 20.8
Std nTPM: 13.0
Median nTPM: 50.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 98.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 96.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 88.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 85.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 85.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 85.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 84.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 84.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 84.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 81.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 80.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 46.6
Samples: 246

Max nTPM: 100.5
Min nTPM: 19.0
Std nTPM: 14.8
Median nTPM: 43.6
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 100.5
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 93.1
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 91.7
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 90.9
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 89.0
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 88.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 81.3
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 79.1
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 77.2
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 76.7
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 76.7
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Brain - Putamen (basal ganglia)
Average nTPM: 52.7
Samples: 205

Max nTPM: 117.6
Min nTPM: 19.3
Std nTPM: 14.7
Median nTPM: 49.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 117.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 109.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 96.2
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 94.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 84.1
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 83.5
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 83.2
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 83.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 82.0
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 81.4
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 79.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 45.6
FF:10164-103B2 76 years, female 45.6
Globus pallidus
Scaled Tags Per Million: 29.6
FF:10161-103A8 76 years, female 41.1
FF:10175-103C4 60 years, female 18.1
Nucleus accumbens
Scaled Tags Per Million: 39.8
FF:10037-101F1 23-56 years, mixed 39.8
Putamen
Scaled Tags Per Million: 47.2
FF:10176-103C5 60 years, female 47.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 33.8
Pig sample Sample description nTPM
Caudate
nTPM: 33.8
Samples: 4

Max nTPM: 38.7
Min nTPM: 28.5
Sample A Female 28.5
Sample B Female 36.0
Sample C Male 38.7
Sample D Male 32.0
Putamen
nTPM: 26.7
Samples: 4

Max nTPM: 31.4
Min nTPM: 18.7
Sample A Female 18.7
Sample B Female 25.8
Sample C Male 31.4
Sample D Male 31.0
Septum
nTPM: 18.6
Samples: 4

Max nTPM: 23.6
Min nTPM: 13.8
Sample A Female 23.6
Sample B Female 21.3
Sample C Male 13.8
Sample D Male 15.5
Ventral pallidum
nTPM: 25.8
Samples: 4

Max nTPM: 28.6
Min nTPM: 21.8
Sample A Female 28.6
Sample B Female 26.4
Sample C Male 21.8
Sample D Male 26.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 33.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 33.9
Samples: 4

Max nTPM: 35.2
Min nTPM: 31.8
Sample A Male 31.8
Sample B Male 34.3
Sample C Female 34.2
Sample D Female 35.2
Septum
nTPM: 26.9
Samples: 4

Max nTPM: 30.7
Min nTPM: 23.8
Sample A Male 27.3
Sample B Male 23.8
Sample C Female 25.6
Sample D Female 30.7
Ventral forebrain
nTPM: 29.9
Samples: 4

Max nTPM: 33.3
Min nTPM: 26.6
Sample A Male 32.2
Sample B Male 27.3
Sample C Female 26.6
Sample D Female 33.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.5
75750439 Antisense, RP_060518_04_H01, Mouse strain C57BL/6J (56 days, male) 3.6
71020388 Antisense, RP_050725_01_A08, Mouse strain C57BL/6J (56 days, male) 1.5
Pallidum
Expression energy: 1.4
75750439 Antisense, RP_060518_04_H01, Mouse strain C57BL/6J (56 days, male) 2.2
71020388 Antisense, RP_050725_01_A08, Mouse strain C57BL/6J (56 days, male) 0.6

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.