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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi 		68.442
RNA expressioni
Consensus:70.1 nTPM
HPA:70.1 nTPM
GTEx:64.6 nTPM
FANTOM5:87.6 Scaled Tags Per Million
Pig:83.7 nTPM
Mouse:113.8 nTPM
Allen mouse:16.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051452Antibody HPA056940
Glial cells Not detectedNot detected
Neuronal cells Not detectedMedium




HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA056940
Hippocampal formation mean intensity 68.442
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 51.064
Molecular layer of the dentate gyrus 64.662
Granular dentate gyrus 24.486
CA1 - oriens layer 53.552
CA1 - pyramidal layer 36.910
CA1 - radiatum layer 59.296
CA2 - oriens layer 68.442
CA2 - pyramidal layer 49.883
CA2 - radiatum layer 62.712
CA3 - oriens layer 51.927
CA3 - pyramidal layer 30.074
CA3 - radiatum layer 60.558
Stratum lucidum 26.355
Lacunosum moleculare 54.274
Subiculum 56.205

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 70.1
Sample id Sample description nTPM
Hippocampus
nTPM: 57.8
2148 Female, age 91, left hemisphere 70.0
2621 Female, age 67, right hemisphere 70.0
1855 Male, age 76, left hemisphere 54.8
1898 Male, age 80, left hemisphere 52.8
1911 Female, age 85, right hemisphere 52.5
2529 Female, age 94, left hemisphere 46.6
Dentate gyrus
nTPM: 62.6
1927 Female, age 91, both hemispheres 85.3
2531 Female, age 67, both hemispheres 72.0
2530 Female, age 94, left hemisphere 65.8
2010 Male, age 76, both hemispheres 55.6
2246 Female, age 85, both hemispheres 50.0
2528 Male, age 74, both hemispheres 46.6
Entorhinal gyrus
nTPM: 48.8
2613 Female, age 94, left hemisphere 69.1
2686 Male, age 75, right hemisphere 48.6
2764 Male, age 80, right hemisphere 47.1
1787 Male, age 76, left hemisphere 45.9
1938 Female, age 85, left hemisphere 45.8
2117 Female, age 91, right hemisphere 36.1
Hippocampus, CA1
nTPM: 70.1
2749 Male, age 80, left hemisphere 124.2
2045 Male, age 76, both hemispheres 65.6
1873 Female, age 85, both hemispheres 57.6
2527 Male, age 74, both hemispheres 55.6
2082 Female, age 91, right hemisphere 47.5
Hippocampus, CA2
nTPM: 50.6
1963 Male, age 80, left hemisphere 67.0
1892 Male, age 76, both hemispheres 66.5
2437 Female, age 94, left hemisphere 48.3
2113 Female, age 91, right hemisphere 45.1
2249 Male, age 74, both hemispheres 45.1
1940 Female, age 85, left hemisphere 31.5
Hippocampus, CA3
nTPM: 70.0
2137 Male, age 80, left hemisphere 109.4
2620 Female, age 94, left hemisphere 95.3
2861 Female, age 67, both hemispheres 78.1
1867 Male, age 76, both hemispheres 56.6
2436 Male, age 74, both hemispheres 42.2
1891 Female, age 85, both hemispheres 38.3
Parahippocampal cortex
nTPM: 45.6
2245 Female, age 91, both hemispheres 75.4
2693 Female, age 94, both hemispheres 48.7
2622 Female, age 67, right hemisphere 48.3
2250 Female, age 67, right hemisphere 47.5
1990 Female, age 91, right hemisphere 41.5
1933 Female, age 85, both hemispheres 40.9
2018 Male, age 76, both hemispheres 40.3
1850 Male, age 80, both hemispheres 39.6
2692 Male, age 74, both hemispheres 38.8
2532 Female, age 72, left hemisphere 35.5
Perirhinal gyrus
nTPM: 46.4
1847 Female, age 91, left hemisphere 53.2
2521 Female, age 94, right hemisphere 51.6
1794 Male, age 80, right hemisphere 47.3
1841 Female, age 85, right hemisphere 40.4
2848 Male, age 76, right hemisphere 39.4
Subiculum
nTPM: 43.6
1901 Male, age 80, both hemispheres 56.1
2729 Female, age 91, right hemisphere 45.3
1977 Female, age 85, both hemispheres 42.6
2042 Male, age 76, both hemispheres 41.6
2619 Male, age 74, both hemispheres 38.7
2438 Female, age 94, left hemisphere 37.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 64.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 64.6
Samples: 197

Max nTPM: 174.9
Min nTPM: 14.4
Std nTPM: 30.2
Median nTPM: 58.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 174.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 144.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 141.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 136.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 126.0
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 125.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 122.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 121.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 120.9
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 119.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 119.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 87.6
FF:10169-103B7 60 years, female 96.2
FF:10153-102I9 76 years, female 79.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 83.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 83.8
Samples: 4

Max nTPM: 115.1
Min nTPM: 51.9
Sample A Female 115.1
Sample B Female 95.1
Sample C Male 51.9
Sample D Male 72.9
Entorhinal cortex
nTPM: 54.4
Samples: 4

Max nTPM: 67.1
Min nTPM: 46.9
Sample A Female 67.1
Sample B Female 46.9
Sample C Male 54.4
Sample D Male 49.2
Subiculum
nTPM: 54.2
Samples: 4

Max nTPM: 70.7
Min nTPM: 46.7
Sample A Female 70.7
Sample B Female 47.1
Sample C Male 52.4
Sample D Male 46.7
Ventral hippocampus
nTPM: 72.9
Samples: 4

Max nTPM: 98.9
Min nTPM: 48.9
Sample A Female 66.3
Sample B Female 48.9
Sample C Male 77.3
Sample D Male 98.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 113.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 94.5
Samples: 4

Max nTPM: 104.5
Min nTPM: 82.6
Sample A Male 82.6
Sample B Male 94.1
Sample C Female 96.8
Sample D Female 104.5
Hippocampal formation
nTPM: 113.8
Samples: 4

Max nTPM: 130.4
Min nTPM: 99.3
Sample A Male 99.3
Sample B Male 110.0
Sample C Female 115.6
Sample D Female 130.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 16.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.5
70928198 Antisense, RP_050725_01_B12, Mouse strain C57BL/6J (56 days, male) 18.6
75694702 Antisense, RP_060518_03_H01, Mouse strain C57BL/6J (56 days, male) 14.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.