ABOUTMENU
HELP
NEWS
TIMMDC1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.6 nTPM
HPA:13.6 nTPM
GTEx:14.1 nTPM
FANTOM5:83.3 Scaled Tags Per Million
Pig:19.2 nTPM
Mouse:19.3 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.2
2666 Male, age 74, left hemisphere 13.7
1870 Female, age 42, unknown 13.6
1830 Male, age 51, unknown 13.5
2019 Male, age 18, unknown 13.5
2586 Male, age 75, left hemisphere 13.5
1833 Male, age 53, unknown 13.3
1827 Male, age 72, unknown 13.2
2828 Female, age 72, unknown 12.8
2219 Male, age 76, both hemispheres 12.7
2411 Female, age 72, unknown 12.6
Dorsal raphe nucleus
nTPM: 13.3
2298 Female, age 72, unknown 13.8
1828 Male, age 53, unknown 13.7
2750 Male, age 76, both hemispheres 13.5
2016 Female, age 72, unknown 12.8
2047 Male, age 72, unknown 12.7
Inferior colliculus
nTPM: 13.1
1890 Male, age 53, unknown 13.5
2097 Female, age 72, unknown 13.1
2849 Male, age 72, unknown 12.9
1848 Female, age 42, unknown 12.8
Median raphe nucleus
nTPM: 12.9
2220 Male, age 76, midline 12.9
Pedunculopontine tegmental nucleus
nTPM: 13.3
1921 Female, age 85, both hemispheres 13.5
2338 Male, age 61, both hemispheres 13.5
2334 Male, age 80, both hemispheres 13.0
Periaquaductal grey, anterior
nTPM: 12.7
1795 Male, age 51, unknown 12.7
2502 Female, age 75, unknown 12.7
1947 Male, age 18, unknown 12.6
Periaquaductal grey, dorsal
nTPM: 13.0
1831 Male, age 72, unknown 13.3
2850 Male, age 76, both hemispheres 13.1
2464 Female, age 72, unknown 13.0
1840 Male, age 53, unknown 12.6
Periaquaductal grey, lateral
nTPM: 12.6
2053 Male, age 18, unknown 12.7
2140 Male, age 76, both hemispheres 12.5
2272 Male, age 74, both hemispheres 12.5
Pretectal area
nTPM: 13.2
1817 Female, age 42, unknown 14.3
1815 Male, age 53, unknown 13.4
2316 Male, age 76, right hemisphere 13.4
2667 Female, age 75, unknown 13.4
1944 Female, age 72, unknown 13.2
1816 Male, age 51, unknown 13.1
2407 Male, age 75, both hemispheres 13.1
2825 Male, age 18, unknown 13.1
2224 Female, age 72, unknown 13.0
2007 Male, age 72, unknown 12.9
2273 Male, age 74, both hemispheres 12.7
Red nucleus
nTPM: 13.6
1821 Female, age 72, unknown 14.3
2725 Female, age 75, unknown 14.1
2503 Female, age 72, unknown 14.0
1904 Male, age 53, unknown 13.7
2823 Male, age 76, right hemisphere 13.7
2227 Male, age 72, unknown 13.6
2588 Male, age 74, left hemisphere 13.6
2769 Male, age 72, unknown 13.6
2785 Male, age 18, unknown 13.4
1954 Female, age 42, unknown 13.3
2584 Male, age 75, left hemisphere 13.1
1865 Male, age 51, unknown 12.9
Substantia nigra
nTPM: 13.6
2699 Male, age 18, unknown 14.4
2241 Male, age 72, unknown 14.1
1889 Female, age 72, unknown 14.0
2583 Male, age 75, right hemisphere 13.9
2665 Male, age 74, both hemispheres 13.8
1851 Male, age 51, unknown 13.7
1916 Female, age 42, unknown 13.6
1941 Male, age 53, unknown 13.3
2590 Female, age 75, unknown 12.9
2409 Female, age 72, unknown 12.4
Superior colliculus
nTPM: 13.3
2587 Male, age 74, left hemisphere 14.3
1995 Male, age 72, unknown 13.6
1796 Male, age 53, unknown 13.5
1895 Male, age 76, right hemisphere 13.5
2087 Female, age 72, unknown 13.3
2668 Female, age 75, unknown 13.3
1839 Male, age 51, unknown 13.0
2664 Male, age 75, both hemispheres 13.0
1913 Female, age 42, unknown 12.9
2261 Male, age 18, unknown 12.6
Ventral tegmental area
nTPM: 13.1
1942 Male, age 51, unknown 13.7
2218 Male, age 76, both hemispheres 13.5
2223 Female, age 72, unknown 13.5
1915 Female, age 42, unknown 13.3
2021 Male, age 53, unknown 12.5
2410 Female, age 72, unknown 12.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.1
Samples: 139

Max nTPM: 28.7
Min nTPM: 6.6
Std nTPM: 4.4
Median nTPM: 13.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 28.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 28.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 25.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 24.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 23.9
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 22.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 22.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 22.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 21.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 21.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 21.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.3
FF:10158-103A5 76 years, female 83.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.2
Pig sample Sample description nTPM
Midbrain
nTPM: 19.2
Samples: 4

Max nTPM: 22.3
Min nTPM: 16.1
Sample A Female 16.1
Sample B Female 17.7
Sample C Male 20.6
Sample D Male 22.3
Periaqueductal gray
nTPM: 15.0
Samples: 3

Max nTPM: 15.7
Min nTPM: 14.1
Sample B Female 15.1
Sample C Male 14.1
Sample D Male 15.7
Substantia nigra
nTPM: 17.5
Samples: 4

Max nTPM: 18.5
Min nTPM: 15.2
Sample A Female 18.2
Sample B Female 15.2
Sample C Male 18.0
Sample D Male 18.5
Superior colliculi
nTPM: 17.7
Samples: 4

Max nTPM: 21.5
Min nTPM: 12.2
Sample A Female 18.0
Sample B Female 12.2
Sample C Male 21.5
Sample D Male 19.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.3
Samples: 4

Max nTPM: 20.4
Min nTPM: 17.7
Sample A Male 18.9
Sample B Male 17.7
Sample C Female 20.4
Sample D Female 20.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
513492 Antisense, RP_040810_01_H12, Mouse strain C57BL/6J (56 days, male) 1.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.