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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.2 nTPM
HPA:43.2 nTPM
GTEx:49.8 nTPM
FANTOM5:73.0 Scaled Tags Per Million
Pig:47.0 nTPM
Mouse:86.3 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.8
2019 Male, age 18, unknown 43.1
1870 Female, age 42, unknown 42.4
2219 Male, age 76, both hemispheres 40.0
1833 Male, age 53, unknown 39.5
2586 Male, age 75, left hemisphere 39.5
2411 Female, age 72, unknown 39.1
1827 Male, age 72, unknown 38.9
1830 Male, age 51, unknown 38.4
2828 Female, age 72, unknown 38.4
2666 Male, age 74, left hemisphere 38.3
Dorsal raphe nucleus
nTPM: 41.1
2298 Female, age 72, unknown 43.3
2750 Male, age 76, both hemispheres 41.8
1828 Male, age 53, unknown 40.7
2047 Male, age 72, unknown 39.9
2016 Female, age 72, unknown 39.8
Inferior colliculus
nTPM: 39.0
1890 Male, age 53, unknown 39.2
2849 Male, age 72, unknown 39.2
2097 Female, age 72, unknown 39.1
1848 Female, age 42, unknown 38.6
Median raphe nucleus
nTPM: 43.2
2220 Male, age 76, midline 43.2
Pedunculopontine tegmental nucleus
nTPM: 42.1
2338 Male, age 61, both hemispheres 43.7
1921 Female, age 85, both hemispheres 41.4
2334 Male, age 80, both hemispheres 41.3
Periaquaductal grey, anterior
nTPM: 39.2
2502 Female, age 75, unknown 40.3
1947 Male, age 18, unknown 39.1
1795 Male, age 51, unknown 38.4
Periaquaductal grey, dorsal
nTPM: 39.0
2850 Male, age 76, both hemispheres 41.9
1840 Male, age 53, unknown 38.6
1831 Male, age 72, unknown 38.3
2464 Female, age 72, unknown 37.0
Periaquaductal grey, lateral
nTPM: 38.6
2272 Male, age 74, both hemispheres 39.8
2140 Male, age 76, both hemispheres 38.2
2053 Male, age 18, unknown 37.9
Pretectal area
nTPM: 41.0
1817 Female, age 42, unknown 43.3
2007 Male, age 72, unknown 43.0
2667 Female, age 75, unknown 42.1
1944 Female, age 72, unknown 42.0
1815 Male, age 53, unknown 41.9
1816 Male, age 51, unknown 41.6
2224 Female, age 72, unknown 40.6
2273 Male, age 74, both hemispheres 39.8
2407 Male, age 75, both hemispheres 39.7
2316 Male, age 76, right hemisphere 38.6
2825 Male, age 18, unknown 38.5
Red nucleus
nTPM: 40.4
1821 Female, age 72, unknown 44.2
1865 Male, age 51, unknown 42.4
2785 Male, age 18, unknown 42.2
1904 Male, age 53, unknown 42.0
1954 Female, age 42, unknown 41.6
2227 Male, age 72, unknown 40.4
2725 Female, age 75, unknown 40.4
2503 Female, age 72, unknown 40.1
2769 Male, age 72, unknown 39.7
2823 Male, age 76, right hemisphere 38.9
2584 Male, age 75, left hemisphere 36.8
2588 Male, age 74, left hemisphere 36.2
Substantia nigra
nTPM: 41.6
2409 Female, age 72, unknown 44.3
1916 Female, age 42, unknown 44.2
2241 Male, age 72, unknown 43.2
1851 Male, age 51, unknown 42.8
1889 Female, age 72, unknown 42.5
2699 Male, age 18, unknown 40.9
1941 Male, age 53, unknown 40.5
2665 Male, age 74, both hemispheres 40.3
2583 Male, age 75, right hemisphere 38.7
2590 Female, age 75, unknown 38.7
Superior colliculus
nTPM: 39.5
1913 Female, age 42, unknown 40.4
2087 Female, age 72, unknown 40.4
2587 Male, age 74, left hemisphere 40.3
1796 Male, age 53, unknown 40.1
2668 Female, age 75, unknown 39.8
1895 Male, age 76, right hemisphere 39.6
1995 Male, age 72, unknown 38.9
1839 Male, age 51, unknown 38.7
2261 Male, age 18, unknown 38.5
2664 Male, age 75, both hemispheres 37.9
Ventral tegmental area
nTPM: 41.3
2218 Male, age 76, both hemispheres 42.6
2223 Female, age 72, unknown 41.8
2410 Female, age 72, unknown 41.7
1915 Female, age 42, unknown 41.5
1942 Male, age 51, unknown 40.6
2021 Male, age 53, unknown 39.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.8
Samples: 139

Max nTPM: 76.6
Min nTPM: 34.9
Std nTPM: 7.1
Median nTPM: 48.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 76.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 67.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 65.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 64.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 63.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 63.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 62.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 62.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 61.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 61.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 60.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.0
FF:10158-103A5 76 years, female 73.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.0
Pig sample Sample description nTPM
Midbrain
nTPM: 47.0
Samples: 4

Max nTPM: 65.0
Min nTPM: 37.4
Sample A Female 65.0
Sample B Female 37.4
Sample C Male 45.6
Sample D Male 39.9
Periaqueductal gray
nTPM: 36.8
Samples: 3

Max nTPM: 37.8
Min nTPM: 35.0
Sample B Female 35.0
Sample C Male 37.8
Sample D Male 37.7
Substantia nigra
nTPM: 42.9
Samples: 4

Max nTPM: 47.3
Min nTPM: 33.8
Sample A Female 47.3
Sample B Female 33.8
Sample C Male 44.7
Sample D Male 45.7
Superior colliculi
nTPM: 43.4
Samples: 4

Max nTPM: 47.4
Min nTPM: 36.2
Sample A Female 45.0
Sample B Female 36.2
Sample C Male 47.4
Sample D Male 45.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 86.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 86.3
Samples: 4

Max nTPM: 90.3
Min nTPM: 79.2
Sample A Male 79.2
Sample B Male 90.3
Sample C Female 86.6
Sample D Female 89.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
68632063 Antisense, RP_050125_01_F05, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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