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NCBP2
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:41.4 nTPM
HPA:41.4 nTPM
GTEx:45.9 nTPM
FANTOM5:99.7 Scaled Tags Per Million
Pig:19.6 nTPM
Mouse:43.4 nTPM
Allen mouse:1.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA044850
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 41.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.4
1857 Female, age 85, left hemisphere 44.2
2481 Female, age 94, left hemisphere 44.1
1854 Male, age 80, left hemisphere 43.0
2290 Female, age 72, unknown 42.2
2846 Female, age 79, unknown 40.6
2288 Male, age 75, left hemisphere 40.4
1781 Male, age 74, unknown 38.9
2289 Male, age 61, right hemisphere 38.1
Claustrum
nTPM: 36.3
2491 Male, age 75, both hemispheres 37.5
2196 Female, age 79, unknown 37.4
2392 Female, age 94, both hemispheres 36.7
1956 Male, age 74, unknown 36.6
2198 Male, age 80, both hemispheres 36.3
2568 Male, age 61, both hemispheres 36.2
2284 Female, age 91, both hemispheres 36.1
2645 Female, age 72, unknown 36.0
2292 Female, age 85, both hemispheres 34.2
Globus pallidus, externus
nTPM: 39.6
2646 Male, age 61, right hemisphere 40.4
1996 Male, age 80, right hemisphere 40.3
2772 Female, age 79, unknown 39.9
2395 Male, age 75, both hemispheres 39.6
2567 Female, age 72, unknown 37.8
Globus pallidus, internus
nTPM: 39.4
2483 Female, age 94, right hemisphere 44.7
2287 Male, age 75, right hemisphere 40.1
2037 Male, age 80, right hemisphere 39.6
1818 Male, age 74, unknown 39.5
2566 Female, age 72, unknown 37.9
2778 Female, age 91, both hemispheres 37.9
2111 Female, age 85, right hemisphere 36.3
Nucleus accumbens
nTPM: 40.1
1856 Female, age 91, right hemisphere 41.9
1806 Female, age 85, left hemisphere 41.4
2698 Female, age 72, unknown 41.3
2824 Male, age 61, right hemisphere 40.5
2286 Male, age 75, left hemisphere 39.6
1783 Male, age 74, unknown 39.4
2391 Female, age 94, left hemisphere 38.5
2732 Male, age 80, right hemisphere 37.9
Nucleus basalis of Meynert
nTPM: 39.9
2569 Male, age 61, both hemispheres 41.1
2393 Male, age 80, right hemisphere 41.0
2484 Female, age 94, left hemisphere 40.3
2821 Male, age 75, both hemispheres 37.1
Nucleus of the diagonal band
nTPM: 39.4
1812 Female, age 91, both hemispheres 40.9
1979 Male, age 74, unknown 40.0
2775 Male, age 80, right hemisphere 39.2
2029 Male, age 61, right hemisphere 38.5
2195 Female, age 85, both hemispheres 38.3
Olfactory tubercle
nTPM: 38.7
1846 Male, age 80, right hemisphere 42.8
2856 Male, age 75, right hemisphere 38.1
1998 Female, age 91, both hemispheres 37.5
2487 Female, age 94, left hemisphere 36.4
Putamen
nTPM: 40.4
1838 Male, age 80, right hemisphere 41.7
2482 Female, age 94, left hemisphere 41.7
2489 Female, age 72, unknown 40.8
1829 Male, age 74, unknown 40.4
1937 Female, age 91, right hemisphere 40.2
2647 Male, age 75, left hemisphere 39.3
2466 Female, age 79, unknown 38.9
Septal nuclei
nTPM: 38.7
2199 Male, age 80, right hemisphere 40.5
2629 Female, age 94, right hemisphere 39.5
2009 Female, age 91, both hemispheres 39.3
2031 Female, age 72, unknown 39.0
1960 Male, age 74, unknown 38.7
2059 Female, age 85, both hemispheres 38.6
2394 Male, age 61, left hemisphere 35.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 45.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 45.6
Samples: 246

Max nTPM: 70.8
Min nTPM: 32.8
Std nTPM: 6.6
Median nTPM: 44.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 70.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 70.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 68.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 67.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 65.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 65.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 61.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 60.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 59.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 59.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 58.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 45.9
Samples: 246

Max nTPM: 76.9
Min nTPM: 30.6
Std nTPM: 6.8
Median nTPM: 45.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 76.9
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 64.5
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 64.3
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 61.3
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 59.6
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 59.6
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 59.3
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 59.2
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 58.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 58.3
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 57.9
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Brain - Putamen (basal ganglia)
Average nTPM: 44.6
Samples: 205

Max nTPM: 66.8
Min nTPM: 26.6
Std nTPM: 7.2
Median nTPM: 44.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 66.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 64.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 64.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 64.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 63.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 62.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 60.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 59.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 58.7
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 58.7
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 58.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 99.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 85.9
FF:10164-103B2 76 years, female 85.9
Globus pallidus
Scaled Tags Per Million: 94.8
FF:10175-103C4 60 years, female 109.7
FF:10161-103A8 76 years, female 80.0
Nucleus accumbens
Scaled Tags Per Million: 58.1
FF:10037-101F1 23-56 years, mixed 58.1
Putamen
Scaled Tags Per Million: 99.7
FF:10176-103C5 60 years, female 99.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 19.6
Pig sample Sample description nTPM
Caudate
nTPM: 16.0
Samples: 4

Max nTPM: 18.2
Min nTPM: 14.6
Sample A Female 18.2
Sample B Female 14.6
Sample C Male 16.1
Sample D Male 14.9
Putamen
nTPM: 19.6
Samples: 4

Max nTPM: 23.2
Min nTPM: 16.1
Sample A Female 23.2
Sample B Female 16.1
Sample C Male 21.9
Sample D Male 17.2
Septum
nTPM: 19.5
Samples: 4

Max nTPM: 21.7
Min nTPM: 16.8
Sample A Female 21.0
Sample B Female 18.3
Sample C Male 21.7
Sample D Male 16.8
Ventral pallidum
nTPM: 18.2
Samples: 4

Max nTPM: 19.8
Min nTPM: 17.3
Sample A Female 17.3
Sample B Female 19.8
Sample C Male 17.7
Sample D Male 18.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 43.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 41.9
Samples: 4

Max nTPM: 46.7
Min nTPM: 38.9
Sample A Male 39.3
Sample B Male 38.9
Sample C Female 46.7
Sample D Female 42.7
Septum
nTPM: 43.4
Samples: 4

Max nTPM: 46.4
Min nTPM: 39.9
Sample A Male 39.9
Sample B Male 42.8
Sample C Female 44.3
Sample D Female 46.4
Ventral forebrain
nTPM: 38.5
Samples: 4

Max nTPM: 40.6
Min nTPM: 35.8
Sample A Male 39.0
Sample B Male 38.7
Sample C Female 35.8
Sample D Female 40.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.3
69782067 Antisense, RP_050505_02_C05, Mouse strain C57BL/6J (56 days, male) 1.3
Pallidum
Expression energy: 0.8
69782067 Antisense, RP_050505_02_C05, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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