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NCBP2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.1 nTPM
HPA:42.1 nTPM
GTEx:43.6 nTPM
FANTOM5:75.9 Scaled Tags Per Million
Pig:22.2 nTPM
Mouse:48.0 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.3
2586 Male, age 75, left hemisphere 43.1
1870 Female, age 42, unknown 40.6
2666 Male, age 74, left hemisphere 40.2
2828 Female, age 72, unknown 39.9
1827 Male, age 72, unknown 39.7
2019 Male, age 18, unknown 38.7
2411 Female, age 72, unknown 38.2
1833 Male, age 53, unknown 37.8
2219 Male, age 76, both hemispheres 37.7
1830 Male, age 51, unknown 37.4
Dorsal raphe nucleus
nTPM: 40.7
2016 Female, age 72, unknown 42.3
1828 Male, age 53, unknown 41.9
2047 Male, age 72, unknown 41.7
2298 Female, age 72, unknown 40.6
2750 Male, age 76, both hemispheres 37.1
Inferior colliculus
nTPM: 41.2
1890 Male, age 53, unknown 42.0
1848 Female, age 42, unknown 41.5
2097 Female, age 72, unknown 40.7
2849 Male, age 72, unknown 40.5
Median raphe nucleus
nTPM: 40.7
2220 Male, age 76, midline 40.7
Pedunculopontine tegmental nucleus
nTPM: 40.0
2334 Male, age 80, both hemispheres 41.1
1921 Female, age 85, both hemispheres 40.8
2338 Male, age 61, both hemispheres 38.2
Periaquaductal grey, anterior
nTPM: 40.8
2502 Female, age 75, unknown 41.5
1947 Male, age 18, unknown 41.4
1795 Male, age 51, unknown 39.5
Periaquaductal grey, dorsal
nTPM: 41.9
1840 Male, age 53, unknown 43.3
2850 Male, age 76, both hemispheres 42.1
1831 Male, age 72, unknown 41.9
2464 Female, age 72, unknown 40.2
Periaquaductal grey, lateral
nTPM: 40.9
2053 Male, age 18, unknown 42.0
2140 Male, age 76, both hemispheres 41.5
2272 Male, age 74, both hemispheres 39.3
Pretectal area
nTPM: 40.4
2273 Male, age 74, both hemispheres 42.4
1944 Female, age 72, unknown 41.9
1816 Male, age 51, unknown 41.5
2407 Male, age 75, both hemispheres 41.4
2224 Female, age 72, unknown 41.3
1815 Male, age 53, unknown 40.5
1817 Female, age 42, unknown 40.2
2825 Male, age 18, unknown 39.7
2007 Male, age 72, unknown 39.0
2667 Female, age 75, unknown 39.0
2316 Male, age 76, right hemisphere 37.4
Red nucleus
nTPM: 39.2
1954 Female, age 42, unknown 41.1
1821 Female, age 72, unknown 40.3
2725 Female, age 75, unknown 40.3
2503 Female, age 72, unknown 40.1
1865 Male, age 51, unknown 39.5
1904 Male, age 53, unknown 39.2
2588 Male, age 74, left hemisphere 39.1
2584 Male, age 75, left hemisphere 38.7
2769 Male, age 72, unknown 38.3
2785 Male, age 18, unknown 38.1
2823 Male, age 76, right hemisphere 37.7
2227 Male, age 72, unknown 37.6
Substantia nigra
nTPM: 42.1
2241 Male, age 72, unknown 46.0
2699 Male, age 18, unknown 43.8
1851 Male, age 51, unknown 43.1
2665 Male, age 74, both hemispheres 42.3
2590 Female, age 75, unknown 41.8
1916 Female, age 42, unknown 41.7
2583 Male, age 75, right hemisphere 41.1
1889 Female, age 72, unknown 40.5
2409 Female, age 72, unknown 40.5
1941 Male, age 53, unknown 39.9
Superior colliculus
nTPM: 39.9
2664 Male, age 75, both hemispheres 42.6
2087 Female, age 72, unknown 41.3
1839 Male, age 51, unknown 40.3
2587 Male, age 74, left hemisphere 40.0
1796 Male, age 53, unknown 39.9
1995 Male, age 72, unknown 39.7
2668 Female, age 75, unknown 39.6
1913 Female, age 42, unknown 39.1
2261 Male, age 18, unknown 39.1
1895 Male, age 76, right hemisphere 37.8
Ventral tegmental area
nTPM: 40.5
1915 Female, age 42, unknown 42.8
1942 Male, age 51, unknown 41.0
2021 Male, age 53, unknown 40.5
2410 Female, age 72, unknown 40.0
2218 Male, age 76, both hemispheres 39.8
2223 Female, age 72, unknown 39.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.6
Samples: 139

Max nTPM: 70.3
Min nTPM: 24.7
Std nTPM: 9.6
Median nTPM: 42.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 70.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 69.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 69.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 66.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 64.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 63.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 60.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 60.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 60.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 60.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 60.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.9
FF:10158-103A5 76 years, female 75.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.2
Pig sample Sample description nTPM
Midbrain
nTPM: 22.2
Samples: 4

Max nTPM: 28.4
Min nTPM: 18.2
Sample A Female 28.4
Sample B Female 22.0
Sample C Male 18.2
Sample D Male 20.3
Periaqueductal gray
nTPM: 18.7
Samples: 3

Max nTPM: 19.3
Min nTPM: 18.2
Sample B Female 19.3
Sample C Male 18.5
Sample D Male 18.2
Substantia nigra
nTPM: 20.8
Samples: 4

Max nTPM: 23.6
Min nTPM: 19.1
Sample A Female 23.6
Sample B Female 20.2
Sample C Male 19.1
Sample D Male 20.1
Superior colliculi
nTPM: 20.0
Samples: 4

Max nTPM: 23.2
Min nTPM: 18.3
Sample A Female 23.2
Sample B Female 19.8
Sample C Male 18.3
Sample D Male 18.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 48.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.0
Samples: 4

Max nTPM: 49.0
Min nTPM: 47.1
Sample A Male 47.1
Sample B Male 49.0
Sample C Female 47.9
Sample D Female 47.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
69782067 Antisense, RP_050505_02_C05, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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