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CSPG5
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:62.5 nTPM
HPA:62.5 nTPM
GTEx:76.7 nTPM
FANTOM5:37.0 Scaled Tags Per Million
Pig:69.3 nTPM
Mouse:266.4 nTPM
Allen mouse:10.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA071779
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 62.5
Sample id Sample description nTPM
Hippocampus
nTPM: 56.2
2621 Female, age 67, right hemisphere 65.1
2529 Female, age 94, left hemisphere 64.4
1911 Female, age 85, right hemisphere 54.8
2148 Female, age 91, left hemisphere 54.5
1898 Male, age 80, left hemisphere 50.3
1855 Male, age 76, left hemisphere 48.4
Dentate gyrus
nTPM: 52.6
2530 Female, age 94, left hemisphere 57.7
2528 Male, age 74, both hemispheres 56.0
2246 Female, age 85, both hemispheres 55.3
1927 Female, age 91, both hemispheres 53.6
2531 Female, age 67, both hemispheres 50.0
2010 Male, age 76, both hemispheres 42.7
Entorhinal gyrus
nTPM: 62.5
1938 Female, age 85, left hemisphere 68.6
1787 Male, age 76, left hemisphere 64.1
2613 Female, age 94, left hemisphere 64.0
2117 Female, age 91, right hemisphere 61.3
2686 Male, age 75, right hemisphere 60.9
2764 Male, age 80, right hemisphere 56.3
Hippocampus, CA1
nTPM: 54.8
2527 Male, age 74, both hemispheres 84.6
1873 Female, age 85, both hemispheres 51.8
2082 Female, age 91, right hemisphere 48.3
2045 Male, age 76, both hemispheres 44.9
2749 Male, age 80, left hemisphere 44.3
Hippocampus, CA2
nTPM: 53.3
2249 Male, age 74, both hemispheres 60.8
2437 Female, age 94, left hemisphere 60.8
2113 Female, age 91, right hemisphere 51.7
1963 Male, age 80, left hemisphere 49.5
1892 Male, age 76, both hemispheres 48.5
1940 Female, age 85, left hemisphere 48.3
Hippocampus, CA3
nTPM: 53.3
2436 Male, age 74, both hemispheres 74.2
2861 Female, age 67, both hemispheres 61.5
1891 Female, age 85, both hemispheres 54.0
1867 Male, age 76, both hemispheres 45.2
2620 Female, age 94, left hemisphere 44.4
2137 Male, age 80, left hemisphere 40.4
Parahippocampal cortex
nTPM: 61.1
2692 Male, age 74, both hemispheres 81.3
1933 Female, age 85, both hemispheres 66.1
2622 Female, age 67, right hemisphere 64.6
2250 Female, age 67, right hemisphere 63.5
2245 Female, age 91, both hemispheres 58.3
2693 Female, age 94, both hemispheres 57.8
1990 Female, age 91, right hemisphere 55.9
1850 Male, age 80, both hemispheres 55.1
2532 Female, age 72, left hemisphere 55.0
2018 Male, age 76, both hemispheres 53.0
Perirhinal gyrus
nTPM: 59.1
1794 Male, age 80, right hemisphere 60.8
1847 Female, age 91, left hemisphere 60.2
1841 Female, age 85, right hemisphere 58.8
2848 Male, age 76, right hemisphere 57.9
2521 Female, age 94, right hemisphere 57.6
Subiculum
nTPM: 58.0
2619 Male, age 74, both hemispheres 81.6
2438 Female, age 94, left hemisphere 65.5
1977 Female, age 85, both hemispheres 57.8
2729 Female, age 91, right hemisphere 56.9
1901 Male, age 80, both hemispheres 44.7
2042 Male, age 76, both hemispheres 41.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 76.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 76.7
Samples: 197

Max nTPM: 199.9
Min nTPM: 16.1
Std nTPM: 33.5
Median nTPM: 72.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 199.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 199.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 191.2
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 181.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 166.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 148.1
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 144.3
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 137.0
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 136.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 133.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 128.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 37.0
FF:10153-102I9 76 years, female 46.8
FF:10169-103B7 60 years, female 27.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 69.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 54.8
Samples: 4

Max nTPM: 64.8
Min nTPM: 44.7
Sample A Female 64.8
Sample B Female 46.2
Sample C Male 63.6
Sample D Male 44.7
Entorhinal cortex
nTPM: 67.5
Samples: 4

Max nTPM: 81.2
Min nTPM: 57.3
Sample A Female 65.5
Sample B Female 65.8
Sample C Male 81.2
Sample D Male 57.3
Subiculum
nTPM: 69.3
Samples: 4

Max nTPM: 91.8
Min nTPM: 60.2
Sample A Female 91.8
Sample B Female 63.6
Sample C Male 61.7
Sample D Male 60.2
Ventral hippocampus
nTPM: 56.0
Samples: 4

Max nTPM: 67.0
Min nTPM: 48.3
Sample A Female 52.4
Sample B Female 48.3
Sample C Male 67.0
Sample D Male 56.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 266.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 266.4
Samples: 4

Max nTPM: 285.4
Min nTPM: 238.5
Sample A Male 274.7
Sample B Male 267.0
Sample C Female 238.5
Sample D Female 285.4
Hippocampal formation
nTPM: 168.4
Samples: 4

Max nTPM: 215.5
Min nTPM: 125.3
Sample A Male 215.5
Sample B Male 163.9
Sample C Female 125.3
Sample D Female 168.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.7
70528557 Antisense, RP_050623_02_H02, Mouse strain C57BL/6J (56 days, male) 11.8
73931385 Antisense, RP_051214_04_D12, Mouse strain C57BL/6J (56 days, male) 9.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.