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CSPG5
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.6 nTPM
HPA:45.6 nTPM
GTEx:43.9 nTPM
FANTOM5:8.1 Scaled Tags Per Million
Pig:41.7 nTPM
Mouse:119.3 nTPM
Allen mouse:8.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.4
2586 Male, age 75, left hemisphere 49.0
2219 Male, age 76, both hemispheres 48.7
1827 Male, age 72, unknown 45.0
2828 Female, age 72, unknown 42.7
1870 Female, age 42, unknown 42.2
1833 Male, age 53, unknown 41.4
2411 Female, age 72, unknown 40.6
1830 Male, age 51, unknown 39.3
2666 Male, age 74, left hemisphere 32.8
2019 Male, age 18, unknown 32.7
Dorsal raphe nucleus
nTPM: 41.3
2750 Male, age 76, both hemispheres 42.8
2047 Male, age 72, unknown 42.6
2298 Female, age 72, unknown 41.3
1828 Male, age 53, unknown 40.2
2016 Female, age 72, unknown 39.5
Inferior colliculus
nTPM: 41.7
2849 Male, age 72, unknown 44.0
1848 Female, age 42, unknown 41.9
2097 Female, age 72, unknown 41.6
1890 Male, age 53, unknown 39.5
Median raphe nucleus
nTPM: 45.3
2220 Male, age 76, midline 45.3
Pedunculopontine tegmental nucleus
nTPM: 41.1
2334 Male, age 80, both hemispheres 44.4
1921 Female, age 85, both hemispheres 44.3
2338 Male, age 61, both hemispheres 34.6
Periaquaductal grey, anterior
nTPM: 45.6
1947 Male, age 18, unknown 47.0
2502 Female, age 75, unknown 46.2
1795 Male, age 51, unknown 43.7
Periaquaductal grey, dorsal
nTPM: 40.8
1840 Male, age 53, unknown 44.4
2464 Female, age 72, unknown 42.7
2850 Male, age 76, both hemispheres 40.6
1831 Male, age 72, unknown 35.7
Periaquaductal grey, lateral
nTPM: 41.0
2053 Male, age 18, unknown 44.3
2140 Male, age 76, both hemispheres 43.0
2272 Male, age 74, both hemispheres 35.9
Pretectal area
nTPM: 41.5
2224 Female, age 72, unknown 46.7
2825 Male, age 18, unknown 45.9
1816 Male, age 51, unknown 43.2
2667 Female, age 75, unknown 43.0
1815 Male, age 53, unknown 42.7
2316 Male, age 76, right hemisphere 41.5
1817 Female, age 42, unknown 41.4
2007 Male, age 72, unknown 41.3
1944 Female, age 72, unknown 40.7
2407 Male, age 75, both hemispheres 36.2
2273 Male, age 74, both hemispheres 34.5
Red nucleus
nTPM: 39.7
2725 Female, age 75, unknown 45.5
2588 Male, age 74, left hemisphere 42.3
2503 Female, age 72, unknown 41.0
2227 Male, age 72, unknown 40.7
2769 Male, age 72, unknown 40.6
1954 Female, age 42, unknown 40.2
2584 Male, age 75, left hemisphere 40.1
1821 Female, age 72, unknown 38.8
1865 Male, age 51, unknown 38.6
1904 Male, age 53, unknown 38.4
2823 Male, age 76, right hemisphere 36.3
2785 Male, age 18, unknown 34.4
Substantia nigra
nTPM: 38.1
2665 Male, age 74, both hemispheres 43.6
2699 Male, age 18, unknown 41.8
2583 Male, age 75, right hemisphere 40.1
1889 Female, age 72, unknown 39.8
1851 Male, age 51, unknown 37.9
2241 Male, age 72, unknown 37.7
1916 Female, age 42, unknown 35.6
2590 Female, age 75, unknown 35.1
2409 Female, age 72, unknown 34.8
1941 Male, age 53, unknown 34.5
Superior colliculus
nTPM: 40.1
2261 Male, age 18, unknown 44.0
1796 Male, age 53, unknown 43.9
1839 Male, age 51, unknown 42.8
1895 Male, age 76, right hemisphere 42.7
2087 Female, age 72, unknown 40.4
2664 Male, age 75, both hemispheres 39.1
1913 Female, age 42, unknown 37.9
2587 Male, age 74, left hemisphere 37.7
1995 Male, age 72, unknown 36.6
2668 Female, age 75, unknown 36.3
Ventral tegmental area
nTPM: 39.7
2223 Female, age 72, unknown 42.4
2218 Male, age 76, both hemispheres 40.9
1942 Male, age 51, unknown 39.2
2021 Male, age 53, unknown 39.1
1915 Female, age 42, unknown 38.8
2410 Female, age 72, unknown 37.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.9
Samples: 139

Max nTPM: 103.7
Min nTPM: 9.8
Std nTPM: 17.5
Median nTPM: 40.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 103.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 90.9
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 82.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 81.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 80.6
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 78.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 74.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 73.5
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 73.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 71.9
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 70.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.1
FF:10158-103A5 76 years, female 8.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.7
Pig sample Sample description nTPM
Midbrain
nTPM: 38.9
Samples: 4

Max nTPM: 50.2
Min nTPM: 27.9
Sample A Female 39.9
Sample B Female 37.5
Sample C Male 50.2
Sample D Male 27.9
Periaqueductal gray
nTPM: 41.7
Samples: 3

Max nTPM: 46.7
Min nTPM: 37.4
Sample B Female 40.9
Sample C Male 46.7
Sample D Male 37.4
Substantia nigra
nTPM: 38.1
Samples: 4

Max nTPM: 49.4
Min nTPM: 27.4
Sample A Female 49.4
Sample B Female 27.4
Sample C Male 44.3
Sample D Male 31.3
Superior colliculi
nTPM: 30.5
Samples: 4

Max nTPM: 36.6
Min nTPM: 19.9
Sample A Female 34.1
Sample B Female 19.9
Sample C Male 36.6
Sample D Male 31.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 119.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 119.4
Samples: 4

Max nTPM: 127.5
Min nTPM: 114.6
Sample A Male 127.5
Sample B Male 117.4
Sample C Female 114.6
Sample D Female 117.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.0
70528557 Antisense, RP_050623_02_H02, Mouse strain C57BL/6J (56 days, male) 9.2
73931385 Antisense, RP_051214_04_D12, Mouse strain C57BL/6J (56 days, male) 6.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.