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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.0 nTPM
HPA:61.0 nTPM
GTEx:56.1 nTPM
FANTOM5:43.6 Scaled Tags Per Million
Pig:17.2 nTPM
Mouse:125.1 nTPM
Allen mouse:14.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 61.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.0
1781 Male, age 74, unknown 58.1
1857 Female, age 85, left hemisphere 57.7
2290 Female, age 72, unknown 55.8
2846 Female, age 79, unknown 54.7
1854 Male, age 80, left hemisphere 54.5
2288 Male, age 75, left hemisphere 52.7
2481 Female, age 94, left hemisphere 50.3
2289 Male, age 61, right hemisphere 48.3
Claustrum
nTPM: 61.0
2568 Male, age 61, both hemispheres 65.1
2645 Female, age 72, unknown 64.6
2198 Male, age 80, both hemispheres 63.6
2491 Male, age 75, both hemispheres 63.5
2284 Female, age 91, both hemispheres 63.0
1956 Male, age 74, unknown 58.2
2392 Female, age 94, both hemispheres 57.9
2196 Female, age 79, unknown 57.3
2292 Female, age 85, both hemispheres 55.8
Globus pallidus, externus
nTPM: 53.2
2772 Female, age 79, unknown 55.9
2395 Male, age 75, both hemispheres 54.5
2567 Female, age 72, unknown 52.8
2646 Male, age 61, right hemisphere 51.9
1996 Male, age 80, right hemisphere 51.0
Globus pallidus, internus
nTPM: 52.4
2287 Male, age 75, right hemisphere 55.1
2483 Female, age 94, right hemisphere 53.1
2778 Female, age 91, both hemispheres 53.1
2111 Female, age 85, right hemisphere 52.6
2566 Female, age 72, unknown 51.5
2037 Male, age 80, right hemisphere 50.7
1818 Male, age 74, unknown 50.6
Nucleus accumbens
nTPM: 54.1
1783 Male, age 74, unknown 58.4
1806 Female, age 85, left hemisphere 57.0
1856 Female, age 91, right hemisphere 56.6
2824 Male, age 61, right hemisphere 54.4
2286 Male, age 75, left hemisphere 53.8
2732 Male, age 80, right hemisphere 52.7
2698 Female, age 72, unknown 50.8
2391 Female, age 94, left hemisphere 49.1
Nucleus basalis of Meynert
nTPM: 53.4
2484 Female, age 94, left hemisphere 55.2
2569 Male, age 61, both hemispheres 54.6
2393 Male, age 80, right hemisphere 52.9
2821 Male, age 75, both hemispheres 51.0
Nucleus of the diagonal band
nTPM: 56.4
2029 Male, age 61, right hemisphere 62.4
2775 Male, age 80, right hemisphere 58.7
1812 Female, age 91, both hemispheres 56.6
2195 Female, age 85, both hemispheres 52.4
1979 Male, age 74, unknown 52.1
Olfactory tubercle
nTPM: 59.9
1998 Female, age 91, both hemispheres 64.2
2487 Female, age 94, left hemisphere 59.3
1846 Male, age 80, right hemisphere 58.1
2856 Male, age 75, right hemisphere 57.9
Putamen
nTPM: 55.1
2466 Female, age 79, unknown 59.0
2647 Male, age 75, left hemisphere 57.2
1937 Female, age 91, right hemisphere 56.3
1829 Male, age 74, unknown 54.5
1838 Male, age 80, right hemisphere 54.0
2489 Female, age 72, unknown 53.7
2482 Female, age 94, left hemisphere 51.3
Septal nuclei
nTPM: 55.1
2031 Female, age 72, unknown 60.7
1960 Male, age 74, unknown 57.9
2394 Male, age 61, left hemisphere 56.3
2009 Female, age 91, both hemispheres 54.6
2059 Female, age 85, both hemispheres 53.9
2629 Female, age 94, right hemisphere 52.7
2199 Male, age 80, right hemisphere 49.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 56.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 53.4
Samples: 246

Max nTPM: 88.0
Min nTPM: 16.2
Std nTPM: 12.8
Median nTPM: 53.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 88.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 87.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 85.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 84.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 84.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 79.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 78.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 77.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 76.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 76.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 76.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 56.1
Samples: 246

Max nTPM: 93.3
Min nTPM: 22.0
Std nTPM: 12.3
Median nTPM: 56.7
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 93.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 89.1
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 84.6
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 84.4
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 80.2
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 79.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 77.5
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 77.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 76.6
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 76.5
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 75.1
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Brain - Putamen (basal ganglia)
Average nTPM: 53.8
Samples: 205

Max nTPM: 84.3
Min nTPM: 28.1
Std nTPM: 11.2
Median nTPM: 53.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 84.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 81.4
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 79.7
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 79.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 79.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 77.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 76.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 75.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 75.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 75.1
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 74.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 29.5
FF:10164-103B2 76 years, female 29.5
Globus pallidus
Scaled Tags Per Million: 16.1
FF:10161-103A8 76 years, female 19.6
FF:10175-103C4 60 years, female 12.6
Nucleus accumbens
Scaled Tags Per Million: 42.1
FF:10037-101F1 23-56 years, mixed 42.1
Putamen
Scaled Tags Per Million: 43.6
FF:10176-103C5 60 years, female 43.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.2
Pig sample Sample description nTPM
Caudate
nTPM: 15.0
Samples: 4

Max nTPM: 16.6
Min nTPM: 12.7
Sample A Female 14.4
Sample B Female 16.1
Sample C Male 16.6
Sample D Male 12.7
Putamen
nTPM: 15.7
Samples: 4

Max nTPM: 17.0
Min nTPM: 13.8
Sample A Female 17.0
Sample B Female 13.8
Sample C Male 16.7
Sample D Male 15.1
Septum
nTPM: 17.3
Samples: 4

Max nTPM: 20.3
Min nTPM: 13.9
Sample A Female 18.7
Sample B Female 16.1
Sample C Male 20.3
Sample D Male 13.9
Ventral pallidum
nTPM: 17.1
Samples: 4

Max nTPM: 23.7
Min nTPM: 13.2
Sample A Female 13.2
Sample B Female 17.4
Sample C Male 23.7
Sample D Male 14.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 125.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 109.5
Samples: 4

Max nTPM: 113.5
Min nTPM: 106.1
Sample A Male 106.1
Sample B Male 113.5
Sample C Female 110.3
Sample D Female 107.9
Septum
nTPM: 109.9
Samples: 4

Max nTPM: 117.8
Min nTPM: 101.7
Sample A Male 115.8
Sample B Male 117.8
Sample C Female 101.7
Sample D Female 104.1
Ventral forebrain
nTPM: 125.1
Samples: 4

Max nTPM: 130.8
Min nTPM: 117.0
Sample A Male 129.1
Sample B Male 123.4
Sample C Female 117.0
Sample D Female 130.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 14.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 14.5
70919364 Antisense, RP_050713_01_B09, Mouse strain C57BL/6J (56 days, male) 17.6
68196922 Antisense, RP_041116_01_E10, Mouse strain C57BL/6J (56 days, male) 11.4
Pallidum
Expression energy: 12.8
70919364 Antisense, RP_050713_01_B09, Mouse strain C57BL/6J (56 days, male) 15.3
68196922 Antisense, RP_041116_01_E10, Mouse strain C57BL/6J (56 days, male) 10.3

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.