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SF3B6
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:82.7 nTPM
HPA:82.7 nTPM
GTEx:68.4 nTPM
FANTOM5:109.5 Scaled Tags Per Million
Pig:15.7 nTPM
Mouse:73.2 nTPM
Allen mouse:1.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA034829Antibody HPA034830
Glial cells LowNot detected
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 82.7
Sample id Sample description nTPM
Hippocampus
nTPM: 82.1
1898 Male, age 80, left hemisphere 84.3
1911 Female, age 85, right hemisphere 83.3
1855 Male, age 76, left hemisphere 83.0
2529 Female, age 94, left hemisphere 82.7
2621 Female, age 67, right hemisphere 80.3
2148 Female, age 91, left hemisphere 79.3
Dentate gyrus
nTPM: 80.8
2010 Male, age 76, both hemispheres 83.3
2246 Female, age 85, both hemispheres 81.9
1927 Female, age 91, both hemispheres 81.1
2530 Female, age 94, left hemisphere 80.4
2528 Male, age 74, both hemispheres 79.9
2531 Female, age 67, both hemispheres 78.3
Entorhinal gyrus
nTPM: 79.6
2117 Female, age 91, right hemisphere 82.5
1938 Female, age 85, left hemisphere 81.5
1787 Male, age 76, left hemisphere 80.7
2764 Male, age 80, right hemisphere 79.5
2686 Male, age 75, right hemisphere 77.5
2613 Female, age 94, left hemisphere 76.1
Hippocampus, CA1
nTPM: 82.7
2527 Male, age 74, both hemispheres 84.4
1873 Female, age 85, both hemispheres 84.3
2749 Male, age 80, left hemisphere 82.4
2045 Male, age 76, both hemispheres 82.2
2082 Female, age 91, right hemisphere 80.4
Hippocampus, CA2
nTPM: 82.1
2249 Male, age 74, both hemispheres 86.2
1892 Male, age 76, both hemispheres 83.4
1940 Female, age 85, left hemisphere 81.8
2437 Female, age 94, left hemisphere 81.0
1963 Male, age 80, left hemisphere 80.6
2113 Female, age 91, right hemisphere 79.4
Hippocampus, CA3
nTPM: 81.0
1891 Female, age 85, both hemispheres 84.1
2436 Male, age 74, both hemispheres 83.7
1867 Male, age 76, both hemispheres 82.8
2137 Male, age 80, left hemisphere 81.2
2620 Female, age 94, left hemisphere 77.5
2861 Female, age 67, both hemispheres 77.0
Parahippocampal cortex
nTPM: 80.6
2250 Female, age 67, right hemisphere 83.0
1850 Male, age 80, both hemispheres 82.9
1933 Female, age 85, both hemispheres 81.8
2018 Male, age 76, both hemispheres 81.7
2245 Female, age 91, both hemispheres 81.3
1990 Female, age 91, right hemisphere 80.8
2532 Female, age 72, left hemisphere 80.2
2693 Female, age 94, both hemispheres 79.1
2692 Male, age 74, both hemispheres 78.5
2622 Female, age 67, right hemisphere 76.9
Perirhinal gyrus
nTPM: 81.3
1841 Female, age 85, right hemisphere 83.1
2521 Female, age 94, right hemisphere 82.1
1847 Female, age 91, left hemisphere 81.7
2848 Male, age 76, right hemisphere 80.3
1794 Male, age 80, right hemisphere 79.5
Subiculum
nTPM: 80.7
2042 Male, age 76, both hemispheres 82.4
1901 Male, age 80, both hemispheres 82.0
1977 Female, age 85, both hemispheres 81.9
2619 Male, age 74, both hemispheres 79.8
2729 Female, age 91, right hemisphere 79.6
2438 Female, age 94, left hemisphere 78.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 68.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 68.4
Samples: 197

Max nTPM: 144.0
Min nTPM: 41.0
Std nTPM: 15.2
Median nTPM: 67.2
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 144.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 139.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 132.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 109.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 101.7
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 101.4
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 97.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 95.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 94.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 94.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 92.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 109.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 109.5
FF:10169-103B7 60 years, female 128.7
FF:10153-102I9 76 years, female 90.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 15.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 15.7
Samples: 4

Max nTPM: 17.8
Min nTPM: 14.1
Sample A Female 16.7
Sample B Female 17.8
Sample C Male 14.1
Sample D Male 14.1
Entorhinal cortex
nTPM: 13.5
Samples: 4

Max nTPM: 17.9
Min nTPM: 11.6
Sample A Female 12.2
Sample B Female 17.9
Sample C Male 12.4
Sample D Male 11.6
Subiculum
nTPM: 13.1
Samples: 4

Max nTPM: 14.0
Min nTPM: 12.1
Sample A Female 13.4
Sample B Female 14.0
Sample C Male 12.1
Sample D Male 12.9
Ventral hippocampus
nTPM: 13.7
Samples: 4

Max nTPM: 15.0
Min nTPM: 12.3
Sample A Female 14.0
Sample B Female 15.0
Sample C Male 12.3
Sample D Male 13.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 73.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 68.9
Samples: 4

Max nTPM: 77.1
Min nTPM: 62.4
Sample A Male 65.9
Sample B Male 70.0
Sample C Female 77.1
Sample D Female 62.4
Hippocampal formation
nTPM: 73.2
Samples: 4

Max nTPM: 83.4
Min nTPM: 66.0
Sample A Male 83.4
Sample B Male 66.0
Sample C Female 71.3
Sample D Female 72.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.1
68342153 Antisense, RP_041207_02_H06, Mouse strain C57BL/6J (56 days, male) 1.1

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