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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:84.2 nTPM
HPA:84.2 nTPM
GTEx:72.4 nTPM
FANTOM5:108.8 Scaled Tags Per Million
Pig:18.5 nTPM
Mouse:85.0 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.1
1870 Female, age 42, unknown 84.1
2019 Male, age 18, unknown 82.4
2411 Female, age 72, unknown 81.9
1833 Male, age 53, unknown 81.1
1830 Male, age 51, unknown 80.7
2219 Male, age 76, both hemispheres 80.4
2828 Female, age 72, unknown 79.7
1827 Male, age 72, unknown 79.5
2666 Male, age 74, left hemisphere 76.1
2586 Male, age 75, left hemisphere 74.8
Dorsal raphe nucleus
nTPM: 82.2
2298 Female, age 72, unknown 86.8
2750 Male, age 76, both hemispheres 82.9
2016 Female, age 72, unknown 81.6
1828 Male, age 53, unknown 80.6
2047 Male, age 72, unknown 79.2
Inferior colliculus
nTPM: 81.7
2097 Female, age 72, unknown 84.3
1848 Female, age 42, unknown 82.0
1890 Male, age 53, unknown 80.7
2849 Male, age 72, unknown 79.9
Median raphe nucleus
nTPM: 83.3
2220 Male, age 76, midline 83.3
Pedunculopontine tegmental nucleus
nTPM: 84.2
2338 Male, age 61, both hemispheres 87.4
2334 Male, age 80, both hemispheres 83.4
1921 Female, age 85, both hemispheres 81.9
Periaquaductal grey, anterior
nTPM: 81.5
1947 Male, age 18, unknown 82.4
2502 Female, age 75, unknown 82.1
1795 Male, age 51, unknown 80.1
Periaquaductal grey, dorsal
nTPM: 81.4
2850 Male, age 76, both hemispheres 84.1
2464 Female, age 72, unknown 81.2
1840 Male, age 53, unknown 80.8
1831 Male, age 72, unknown 79.3
Periaquaductal grey, lateral
nTPM: 83.0
2272 Male, age 74, both hemispheres 86.3
2140 Male, age 76, both hemispheres 82.3
2053 Male, age 18, unknown 80.5
Pretectal area
nTPM: 81.6
2273 Male, age 74, both hemispheres 86.2
2224 Female, age 72, unknown 84.5
1815 Male, age 53, unknown 83.0
1817 Female, age 42, unknown 81.3
2667 Female, age 75, unknown 81.3
1944 Female, age 72, unknown 81.2
2007 Male, age 72, unknown 80.9
2316 Male, age 76, right hemisphere 80.7
1816 Male, age 51, unknown 80.1
2825 Male, age 18, unknown 80.1
2407 Male, age 75, both hemispheres 78.3
Red nucleus
nTPM: 82.5
1954 Female, age 42, unknown 85.1
1821 Female, age 72, unknown 84.8
1865 Male, age 51, unknown 84.8
1904 Male, age 53, unknown 84.2
2503 Female, age 72, unknown 84.1
2725 Female, age 75, unknown 83.8
2227 Male, age 72, unknown 82.8
2785 Male, age 18, unknown 82.2
2769 Male, age 72, unknown 82.0
2823 Male, age 76, right hemisphere 81.8
2588 Male, age 74, left hemisphere 77.8
2584 Male, age 75, left hemisphere 76.5
Substantia nigra
nTPM: 80.9
2241 Male, age 72, unknown 86.1
1889 Female, age 72, unknown 82.8
1851 Male, age 51, unknown 81.8
2699 Male, age 18, unknown 81.4
1916 Female, age 42, unknown 81.1
1941 Male, age 53, unknown 80.4
2590 Female, age 75, unknown 80.3
2665 Male, age 74, both hemispheres 80.1
2409 Female, age 72, unknown 78.9
2583 Male, age 75, right hemisphere 76.6
Superior colliculus
nTPM: 80.6
2587 Male, age 74, left hemisphere 83.0
1913 Female, age 42, unknown 82.9
1995 Male, age 72, unknown 82.9
1895 Male, age 76, right hemisphere 82.0
1796 Male, age 53, unknown 80.2
2087 Female, age 72, unknown 79.9
1839 Male, age 51, unknown 79.8
2261 Male, age 18, unknown 79.7
2668 Female, age 75, unknown 79.1
2664 Male, age 75, both hemispheres 76.6
Ventral tegmental area
nTPM: 82.2
2223 Female, age 72, unknown 83.8
1915 Female, age 42, unknown 83.0
2218 Male, age 76, both hemispheres 82.7
2410 Female, age 72, unknown 81.8
1942 Male, age 51, unknown 81.1
2021 Male, age 53, unknown 80.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 72.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.4
Samples: 139

Max nTPM: 148.5
Min nTPM: 42.9
Std nTPM: 20.0
Median nTPM: 68.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 148.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 140.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 131.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 126.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 116.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 116.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 115.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 110.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 107.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 107.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 102.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 108.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 108.8
FF:10158-103A5 76 years, female 108.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.5
Pig sample Sample description nTPM
Midbrain
nTPM: 18.5
Samples: 4

Max nTPM: 21.3
Min nTPM: 16.8
Sample A Female 21.3
Sample B Female 18.9
Sample C Male 16.8
Sample D Male 16.8
Periaqueductal gray
nTPM: 14.4
Samples: 3

Max nTPM: 16.1
Min nTPM: 13.0
Sample B Female 16.1
Sample C Male 14.0
Sample D Male 13.0
Substantia nigra
nTPM: 16.4
Samples: 4

Max nTPM: 20.5
Min nTPM: 14.4
Sample A Female 20.5
Sample B Female 15.9
Sample C Male 14.9
Sample D Male 14.4
Superior colliculi
nTPM: 17.1
Samples: 4

Max nTPM: 17.6
Min nTPM: 16.6
Sample A Female 17.3
Sample B Female 16.6
Sample C Male 17.6
Sample D Male 16.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 85.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.0
Samples: 4

Max nTPM: 87.6
Min nTPM: 82.5
Sample A Male 86.3
Sample B Male 83.6
Sample C Female 82.5
Sample D Female 87.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68342153 Antisense, RP_041207_02_H06, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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