ABOUTMENU
HELP
NEWS
SF3B1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:98.2 nTPM
HPA:98.2 nTPM
GTEx:91.7 nTPM
FANTOM5:156.6 Scaled Tags Per Million
Pig:75.1 nTPM
Mouse:59.2 nTPM
Allen mouse:1.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA050275
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 98.2
Sample id Sample description nTPM
Hippocampus
nTPM: 96.1
1911 Female, age 85, right hemisphere 100.5
2621 Female, age 67, right hemisphere 96.5
1855 Male, age 76, left hemisphere 95.7
2529 Female, age 94, left hemisphere 94.8
1898 Male, age 80, left hemisphere 94.7
2148 Female, age 91, left hemisphere 94.1
Dentate gyrus
nTPM: 96.4
2010 Male, age 76, both hemispheres 103.1
2528 Male, age 74, both hemispheres 98.1
2246 Female, age 85, both hemispheres 97.2
2531 Female, age 67, both hemispheres 94.2
1927 Female, age 91, both hemispheres 93.5
2530 Female, age 94, left hemisphere 92.2
Entorhinal gyrus
nTPM: 94.3
2117 Female, age 91, right hemisphere 98.0
1938 Female, age 85, left hemisphere 97.4
1787 Male, age 76, left hemisphere 96.3
2764 Male, age 80, right hemisphere 93.8
2686 Male, age 75, right hemisphere 91.1
2613 Female, age 94, left hemisphere 89.2
Hippocampus, CA1
nTPM: 96.6
1873 Female, age 85, both hemispheres 99.4
2045 Male, age 76, both hemispheres 98.0
2527 Male, age 74, both hemispheres 97.6
2749 Male, age 80, left hemisphere 95.6
2082 Female, age 91, right hemisphere 92.2
Hippocampus, CA2
nTPM: 96.6
2249 Male, age 74, both hemispheres 100.2
1892 Male, age 76, both hemispheres 99.0
1940 Female, age 85, left hemisphere 98.0
2113 Female, age 91, right hemisphere 95.4
1963 Male, age 80, left hemisphere 93.6
2437 Female, age 94, left hemisphere 93.2
Hippocampus, CA3
nTPM: 96.3
1891 Female, age 85, both hemispheres 103.8
2436 Male, age 74, both hemispheres 103.6
1867 Male, age 76, both hemispheres 101.4
2137 Male, age 80, left hemisphere 95.9
2861 Female, age 67, both hemispheres 87.5
2620 Female, age 94, left hemisphere 85.5
Parahippocampal cortex
nTPM: 96.3
2018 Male, age 76, both hemispheres 102.5
1933 Female, age 85, both hemispheres 99.1
1850 Male, age 80, both hemispheres 99.0
2693 Female, age 94, both hemispheres 97.2
2250 Female, age 67, right hemisphere 96.3
2532 Female, age 72, left hemisphere 96.0
1990 Female, age 91, right hemisphere 94.9
2692 Male, age 74, both hemispheres 94.7
2245 Female, age 91, both hemispheres 91.8
2622 Female, age 67, right hemisphere 91.2
Perirhinal gyrus
nTPM: 97.9
1841 Female, age 85, right hemisphere 102.2
2521 Female, age 94, right hemisphere 101.5
1794 Male, age 80, right hemisphere 96.5
2848 Male, age 76, right hemisphere 96.1
1847 Female, age 91, left hemisphere 93.4
Subiculum
nTPM: 98.2
2042 Male, age 76, both hemispheres 101.5
1901 Male, age 80, both hemispheres 100.5
1977 Female, age 85, both hemispheres 99.6
2438 Female, age 94, left hemisphere 96.4
2619 Male, age 74, both hemispheres 96.1
2729 Female, age 91, right hemisphere 94.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 91.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 91.7
Samples: 197

Max nTPM: 189.0
Min nTPM: 31.5
Std nTPM: 21.7
Median nTPM: 87.3
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 189.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 172.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 166.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 164.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 161.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 136.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 134.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 133.6
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 132.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 129.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 127.6
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 156.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 156.6
FF:10153-102I9 76 years, female 164.6
FF:10169-103B7 60 years, female 148.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 75.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 75.2
Samples: 4

Max nTPM: 82.4
Min nTPM: 67.4
Sample A Female 67.4
Sample B Female 71.6
Sample C Male 79.2
Sample D Male 82.4
Entorhinal cortex
nTPM: 73.7
Samples: 4

Max nTPM: 80.4
Min nTPM: 67.3
Sample A Female 67.3
Sample B Female 80.4
Sample C Male 74.5
Sample D Male 72.4
Subiculum
nTPM: 74.6
Samples: 4

Max nTPM: 75.3
Min nTPM: 73.7
Sample A Female 75.0
Sample B Female 74.3
Sample C Male 75.3
Sample D Male 73.7
Ventral hippocampus
nTPM: 71.8
Samples: 4

Max nTPM: 79.8
Min nTPM: 63.8
Sample A Female 70.4
Sample B Female 79.8
Sample C Male 63.8
Sample D Male 73.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 59.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 55.5
Samples: 4

Max nTPM: 59.0
Min nTPM: 51.3
Sample A Male 55.1
Sample B Male 59.0
Sample C Female 56.7
Sample D Female 51.3
Hippocampal formation
nTPM: 59.2
Samples: 4

Max nTPM: 61.4
Min nTPM: 56.6
Sample A Male 60.5
Sample B Male 61.4
Sample C Female 58.4
Sample D Female 56.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
69873612 Antisense, RP_050512_01_F03, Mouse strain C57BL/6J (56 days, male) 1.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.