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SF3B1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:101.9 nTPM
HPA:101.9 nTPM
GTEx:95.1 nTPM
FANTOM5:249.9 Scaled Tags Per Million
Pig:77.0 nTPM
Mouse:56.8 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 101.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 98.0
2411 Female, age 72, unknown 111.2
1833 Male, age 53, unknown 104.5
1830 Male, age 51, unknown 103.6
1870 Female, age 42, unknown 102.3
2019 Male, age 18, unknown 101.0
1827 Male, age 72, unknown 97.0
2219 Male, age 76, both hemispheres 96.9
2828 Female, age 72, unknown 96.1
2666 Male, age 74, left hemisphere 88.8
2586 Male, age 75, left hemisphere 78.2
Dorsal raphe nucleus
nTPM: 95.0
2750 Male, age 76, both hemispheres 98.1
2016 Female, age 72, unknown 97.1
1828 Male, age 53, unknown 94.8
2047 Male, age 72, unknown 92.6
2298 Female, age 72, unknown 92.5
Inferior colliculus
nTPM: 99.1
1848 Female, age 42, unknown 102.2
2097 Female, age 72, unknown 99.6
1890 Male, age 53, unknown 98.3
2849 Male, age 72, unknown 96.3
Median raphe nucleus
nTPM: 96.6
2220 Male, age 76, midline 96.6
Pedunculopontine tegmental nucleus
nTPM: 100.7
2338 Male, age 61, both hemispheres 102.4
1921 Female, age 85, both hemispheres 102.1
2334 Male, age 80, both hemispheres 97.6
Periaquaductal grey, anterior
nTPM: 94.6
1947 Male, age 18, unknown 96.6
2502 Female, age 75, unknown 96.4
1795 Male, age 51, unknown 90.8
Periaquaductal grey, dorsal
nTPM: 98.1
2464 Female, age 72, unknown 100.9
2850 Male, age 76, both hemispheres 100.8
1831 Male, age 72, unknown 97.1
1840 Male, age 53, unknown 93.5
Periaquaductal grey, lateral
nTPM: 98.1
2140 Male, age 76, both hemispheres 98.9
2272 Male, age 74, both hemispheres 98.6
2053 Male, age 18, unknown 96.8
Pretectal area
nTPM: 96.6
2316 Male, age 76, right hemisphere 101.9
2273 Male, age 74, both hemispheres 101.0
1815 Male, age 53, unknown 100.9
1817 Female, age 42, unknown 97.8
2667 Female, age 75, unknown 95.7
1944 Female, age 72, unknown 95.1
2007 Male, age 72, unknown 94.9
2825 Male, age 18, unknown 94.5
2224 Female, age 72, unknown 94.3
1816 Male, age 51, unknown 93.5
2407 Male, age 75, both hemispheres 92.9
Red nucleus
nTPM: 101.9
1904 Male, age 53, unknown 110.0
2503 Female, age 72, unknown 108.8
1865 Male, age 51, unknown 107.1
1954 Female, age 42, unknown 105.6
1821 Female, age 72, unknown 105.3
2227 Male, age 72, unknown 103.1
2769 Male, age 72, unknown 102.1
2823 Male, age 76, right hemisphere 101.3
2785 Male, age 18, unknown 101.1
2725 Female, age 75, unknown 96.8
2588 Male, age 74, left hemisphere 94.9
2584 Male, age 75, left hemisphere 86.5
Substantia nigra
nTPM: 97.4
2409 Female, age 72, unknown 114.0
1889 Female, age 72, unknown 101.6
2590 Female, age 75, unknown 100.0
2583 Male, age 75, right hemisphere 97.7
2241 Male, age 72, unknown 97.1
2699 Male, age 18, unknown 95.2
1851 Male, age 51, unknown 94.4
2665 Male, age 74, both hemispheres 94.1
1941 Male, age 53, unknown 91.0
1916 Female, age 42, unknown 88.8
Superior colliculus
nTPM: 98.1
1913 Female, age 42, unknown 111.2
1995 Male, age 72, unknown 103.1
2587 Male, age 74, left hemisphere 101.9
1895 Male, age 76, right hemisphere 100.9
1839 Male, age 51, unknown 99.3
2668 Female, age 75, unknown 97.7
2261 Male, age 18, unknown 96.7
2087 Female, age 72, unknown 95.4
1796 Male, age 53, unknown 94.7
2664 Male, age 75, both hemispheres 80.1
Ventral tegmental area
nTPM: 97.6
2410 Female, age 72, unknown 108.3
2218 Male, age 76, both hemispheres 97.2
2223 Female, age 72, unknown 97.2
1915 Female, age 42, unknown 95.1
1942 Male, age 51, unknown 94.3
2021 Male, age 53, unknown 93.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 95.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 95.1
Samples: 139

Max nTPM: 192.0
Min nTPM: 44.9
Std nTPM: 23.1
Median nTPM: 91.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 192.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 170.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 167.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 167.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 143.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 140.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 132.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 130.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 129.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 128.2
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 128.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 249.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 249.9
FF:10158-103A5 76 years, female 249.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 77.0
Pig sample Sample description nTPM
Midbrain
nTPM: 77.0
Samples: 4

Max nTPM: 78.6
Min nTPM: 73.6
Sample A Female 73.6
Sample B Female 78.1
Sample C Male 77.8
Sample D Male 78.6
Periaqueductal gray
nTPM: 76.5
Samples: 3

Max nTPM: 82.9
Min nTPM: 72.8
Sample B Female 82.9
Sample C Male 72.8
Sample D Male 73.9
Substantia nigra
nTPM: 72.4
Samples: 4

Max nTPM: 80.6
Min nTPM: 61.3
Sample A Female 61.3
Sample B Female 79.0
Sample C Male 68.6
Sample D Male 80.6
Superior colliculi
nTPM: 72.8
Samples: 4

Max nTPM: 86.3
Min nTPM: 60.8
Sample A Female 60.8
Sample B Female 86.3
Sample C Male 71.8
Sample D Male 72.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 56.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 56.8
Samples: 4

Max nTPM: 61.4
Min nTPM: 54.1
Sample A Male 54.3
Sample B Male 57.4
Sample C Female 61.4
Sample D Female 54.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69873612 Antisense, RP_050512_01_F03, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.