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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:88.5 nTPM
HPA:88.5 nTPM
GTEx:84.6 nTPM
FANTOM5:254.2 Scaled Tags Per Million
Pig:44.3 nTPM
Mouse:187.3 nTPM
Allen mouse:1.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 88.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 76.2
2481 Female, age 94, left hemisphere 105.9
2288 Male, age 75, left hemisphere 98.9
1781 Male, age 74, unknown 79.5
2289 Male, age 61, right hemisphere 73.3
2290 Female, age 72, unknown 68.1
2846 Female, age 79, unknown 64.1
1854 Male, age 80, left hemisphere 61.1
1857 Female, age 85, left hemisphere 58.8
Claustrum
nTPM: 76.6
1956 Male, age 74, unknown 84.5
2645 Female, age 72, unknown 83.9
2198 Male, age 80, both hemispheres 80.6
2491 Male, age 75, both hemispheres 80.3
2392 Female, age 94, both hemispheres 74.5
2284 Female, age 91, both hemispheres 72.9
2292 Female, age 85, both hemispheres 72.7
2568 Male, age 61, both hemispheres 72.2
2196 Female, age 79, unknown 68.4
Globus pallidus, externus
nTPM: 69.4
1996 Male, age 80, right hemisphere 82.9
2772 Female, age 79, unknown 74.1
2395 Male, age 75, both hemispheres 68.9
2646 Male, age 61, right hemisphere 64.9
2567 Female, age 72, unknown 56.3
Globus pallidus, internus
nTPM: 72.9
2483 Female, age 94, right hemisphere 78.2
1818 Male, age 74, unknown 76.7
2037 Male, age 80, right hemisphere 75.1
2287 Male, age 75, right hemisphere 73.1
2778 Female, age 91, both hemispheres 72.8
2111 Female, age 85, right hemisphere 72.7
2566 Female, age 72, unknown 62.1
Nucleus accumbens
nTPM: 66.8
2286 Male, age 75, left hemisphere 100.2
2391 Female, age 94, left hemisphere 79.4
2732 Male, age 80, right hemisphere 65.1
2698 Female, age 72, unknown 60.4
1783 Male, age 74, unknown 60.0
1806 Female, age 85, left hemisphere 59.6
1856 Female, age 91, right hemisphere 55.5
2824 Male, age 61, right hemisphere 54.3
Nucleus basalis of Meynert
nTPM: 68.3
2484 Female, age 94, left hemisphere 76.8
2821 Male, age 75, both hemispheres 70.2
2569 Male, age 61, both hemispheres 66.4
2393 Male, age 80, right hemisphere 59.6
Nucleus of the diagonal band
nTPM: 85.0
2775 Male, age 80, right hemisphere 90.9
2195 Female, age 85, both hemispheres 90.7
1812 Female, age 91, both hemispheres 89.5
2029 Male, age 61, right hemisphere 83.9
1979 Male, age 74, unknown 70.1
Olfactory tubercle
nTPM: 88.5
2856 Male, age 75, right hemisphere 90.9
2487 Female, age 94, left hemisphere 88.4
1846 Male, age 80, right hemisphere 87.6
1998 Female, age 91, both hemispheres 87.2
Putamen
nTPM: 70.1
2482 Female, age 94, left hemisphere 89.8
2647 Male, age 75, left hemisphere 84.8
2489 Female, age 72, unknown 72.7
1829 Male, age 74, unknown 68.9
2466 Female, age 79, unknown 64.3
1937 Female, age 91, right hemisphere 56.3
1838 Male, age 80, right hemisphere 53.7
Septal nuclei
nTPM: 87.7
2031 Female, age 72, unknown 109.9
2629 Female, age 94, right hemisphere 98.9
1960 Male, age 74, unknown 90.5
2009 Female, age 91, both hemispheres 90.4
2059 Female, age 85, both hemispheres 83.5
2199 Male, age 80, right hemisphere 81.5
2394 Male, age 61, left hemisphere 59.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 84.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 84.0
Samples: 246

Max nTPM: 268.7
Min nTPM: 18.1
Std nTPM: 36.5
Median nTPM: 76.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 268.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 223.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 190.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 189.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 182.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 179.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 173.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 164.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 164.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 155.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 155.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 49.4
Samples: 246

Max nTPM: 246.7
Min nTPM: 9.5
Std nTPM: 26.4
Median nTPM: 44.5
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 246.7
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 178.2
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 159.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 127.4
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 127.2
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 114.8
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 105.4
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 103.0
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 99.9
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 93.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 92.2
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Brain - Putamen (basal ganglia)
Average nTPM: 84.6
Samples: 205

Max nTPM: 334.0
Min nTPM: 18.7
Std nTPM: 47.4
Median nTPM: 71.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 334.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 273.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 247.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 212.7
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 209.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 204.1
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 191.4
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 187.3
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 179.3
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 179.2
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 173.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 254.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 98.5
FF:10164-103B2 76 years, female 98.5
Globus pallidus
Scaled Tags Per Million: 254.2
FF:10175-103C4 60 years, female 357.5
FF:10161-103A8 76 years, female 150.8
Nucleus accumbens
Scaled Tags Per Million: 219.9
FF:10037-101F1 23-56 years, mixed 219.9
Putamen
Scaled Tags Per Million: 120.2
FF:10176-103C5 60 years, female 120.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 44.3
Pig sample Sample description nTPM
Caudate
nTPM: 39.6
Samples: 4

Max nTPM: 50.6
Min nTPM: 33.3
Sample A Female 33.3
Sample B Female 35.7
Sample C Male 50.6
Sample D Male 38.9
Putamen
nTPM: 44.3
Samples: 4

Max nTPM: 51.3
Min nTPM: 33.5
Sample A Female 51.3
Sample B Female 33.5
Sample C Male 46.8
Sample D Male 45.5
Septum
nTPM: 28.1
Samples: 4

Max nTPM: 34.2
Min nTPM: 19.4
Sample A Female 28.5
Sample B Female 19.4
Sample C Male 30.1
Sample D Male 34.2
Ventral pallidum
nTPM: 28.1
Samples: 4

Max nTPM: 35.4
Min nTPM: 24.9
Sample A Female 25.6
Sample B Female 26.4
Sample C Male 24.9
Sample D Male 35.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 187.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 145.5
Samples: 4

Max nTPM: 179.1
Min nTPM: 121.7
Sample A Male 121.7
Sample B Male 127.9
Sample C Female 179.1
Sample D Female 153.1
Septum
nTPM: 116.5
Samples: 4

Max nTPM: 123.9
Min nTPM: 106.6
Sample A Male 114.2
Sample B Male 123.9
Sample C Female 121.1
Sample D Female 106.6
Ventral forebrain
nTPM: 187.3
Samples: 4

Max nTPM: 211.8
Min nTPM: 150.7
Sample A Male 194.3
Sample B Male 150.7
Sample C Female 211.8
Sample D Female 192.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.4
71836806 Antisense, RP_051017_02_A11, Mouse strain C57BL/6J (56 days, male) 2.4
413825 Antisense, RP_040809_01_G11, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.7
71836806 Antisense, RP_051017_02_A11, Mouse strain C57BL/6J (56 days, male) 1.3
413825 Antisense, RP_040809_01_G11, Mouse strain C57BL/6J (56 days, male) 0.1

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.