ABOUTMENU
HELP
NEWS
ID2
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:89.6 nTPM
HPA:89.6 nTPM
GTEx:80.7 nTPM
FANTOM5:290.1 Scaled Tags Per Million
Pig:56.1 nTPM
Mouse:222.8 nTPM
Allen mouse:4.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 89.6
Sample id Sample description nTPM
Hippocampus
nTPM: 84.8
2529 Female, age 94, left hemisphere 88.4
2148 Female, age 91, left hemisphere 88.1
1855 Male, age 76, left hemisphere 86.7
2621 Female, age 67, right hemisphere 84.5
1898 Male, age 80, left hemisphere 81.8
1911 Female, age 85, right hemisphere 79.2
Dentate gyrus
nTPM: 77.3
2528 Male, age 74, both hemispheres 92.0
2010 Male, age 76, both hemispheres 78.9
2246 Female, age 85, both hemispheres 78.4
2531 Female, age 67, both hemispheres 75.3
2530 Female, age 94, left hemisphere 70.5
1927 Female, age 91, both hemispheres 68.6
Entorhinal gyrus
nTPM: 80.5
2117 Female, age 91, right hemisphere 99.2
2764 Male, age 80, right hemisphere 95.0
1787 Male, age 76, left hemisphere 80.5
2686 Male, age 75, right hemisphere 73.4
1938 Female, age 85, left hemisphere 70.5
2613 Female, age 94, left hemisphere 64.3
Hippocampus, CA1
nTPM: 77.7
2527 Male, age 74, both hemispheres 93.6
2045 Male, age 76, both hemispheres 83.3
1873 Female, age 85, both hemispheres 74.5
2082 Female, age 91, right hemisphere 71.4
2749 Male, age 80, left hemisphere 65.5
Hippocampus, CA2
nTPM: 79.5
2249 Male, age 74, both hemispheres 87.4
1940 Female, age 85, left hemisphere 82.5
1963 Male, age 80, left hemisphere 79.1
2437 Female, age 94, left hemisphere 78.0
2113 Female, age 91, right hemisphere 76.9
1892 Male, age 76, both hemispheres 73.4
Hippocampus, CA3
nTPM: 77.6
2436 Male, age 74, both hemispheres 90.4
1867 Male, age 76, both hemispheres 79.8
2861 Female, age 67, both hemispheres 79.1
1891 Female, age 85, both hemispheres 78.7
2620 Female, age 94, left hemisphere 72.2
2137 Male, age 80, left hemisphere 65.5
Parahippocampal cortex
nTPM: 86.9
2532 Female, age 72, left hemisphere 112.8
2018 Male, age 76, both hemispheres 98.3
2622 Female, age 67, right hemisphere 93.3
1850 Male, age 80, both hemispheres 89.6
2245 Female, age 91, both hemispheres 86.8
1933 Female, age 85, both hemispheres 82.0
2693 Female, age 94, both hemispheres 81.2
2692 Male, age 74, both hemispheres 76.5
2250 Female, age 67, right hemisphere 74.3
1990 Female, age 91, right hemisphere 73.9
Perirhinal gyrus
nTPM: 89.6
1794 Male, age 80, right hemisphere 104.1
2848 Male, age 76, right hemisphere 99.0
1841 Female, age 85, right hemisphere 92.6
2521 Female, age 94, right hemisphere 79.5
1847 Female, age 91, left hemisphere 72.8
Subiculum
nTPM: 83.2
2729 Female, age 91, right hemisphere 93.3
2619 Male, age 74, both hemispheres 92.9
2438 Female, age 94, left hemisphere 86.8
2042 Male, age 76, both hemispheres 80.8
1977 Female, age 85, both hemispheres 73.8
1901 Male, age 80, both hemispheres 71.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 80.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 80.7
Samples: 197

Max nTPM: 313.6
Min nTPM: 19.8
Std nTPM: 37.7
Median nTPM: 75.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 313.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 197.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 193.4
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 183.4
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 167.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 167.0
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 157.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 151.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 151.2
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 151.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 140.9
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 290.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 290.1
FF:10169-103B7 60 years, female 308.6
FF:10153-102I9 76 years, female 271.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 56.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 51.6
Samples: 4

Max nTPM: 68.3
Min nTPM: 32.1
Sample A Female 59.4
Sample B Female 32.1
Sample C Male 68.3
Sample D Male 46.4
Entorhinal cortex
nTPM: 56.1
Samples: 4

Max nTPM: 62.8
Min nTPM: 51.2
Sample A Female 62.8
Sample B Female 51.2
Sample C Male 55.3
Sample D Male 54.9
Subiculum
nTPM: 38.4
Samples: 4

Max nTPM: 45.4
Min nTPM: 29.1
Sample A Female 45.4
Sample B Female 29.1
Sample C Male 37.2
Sample D Male 41.8
Ventral hippocampus
nTPM: 46.2
Samples: 4

Max nTPM: 58.4
Min nTPM: 32.5
Sample A Female 45.2
Sample B Female 32.5
Sample C Male 58.4
Sample D Male 48.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 222.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 222.8
Samples: 4

Max nTPM: 258.4
Min nTPM: 174.9
Sample A Male 246.4
Sample B Male 258.4
Sample C Female 211.4
Sample D Female 174.9
Hippocampal formation
nTPM: 146.5
Samples: 4

Max nTPM: 168.4
Min nTPM: 131.7
Sample A Male 168.4
Sample B Male 132.7
Sample C Female 131.7
Sample D Female 153.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.7
71836806 Antisense, RP_051017_02_A11, Mouse strain C57BL/6J (56 days, male) 5.6
413825 Antisense, RP_040809_01_G11, Mouse strain C57BL/6J (56 days, male) 3.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.