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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.0 nTPM
HPA:8.0 nTPM
GTEx:9.8 nTPM
FANTOM5:42.9 Scaled Tags Per Million
Pig:10.2 nTPM
Mouse:33.3 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 8.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 8.0
2290 Female, age 72, unknown 9.0
1857 Female, age 85, left hemisphere 8.9
2846 Female, age 79, unknown 8.5
1854 Male, age 80, left hemisphere 7.7
2481 Female, age 94, left hemisphere 7.7
1781 Male, age 74, unknown 7.5
2288 Male, age 75, left hemisphere 7.3
2289 Male, age 61, right hemisphere 7.3
Claustrum
nTPM: 6.6
2196 Female, age 79, unknown 6.9
2392 Female, age 94, both hemispheres 6.9
2292 Female, age 85, both hemispheres 6.8
2645 Female, age 72, unknown 6.6
1956 Male, age 74, unknown 6.5
2198 Male, age 80, both hemispheres 6.5
2284 Female, age 91, both hemispheres 6.5
2491 Male, age 75, both hemispheres 6.5
2568 Male, age 61, both hemispheres 6.2
Globus pallidus, externus
nTPM: 6.7
2395 Male, age 75, both hemispheres 7.2
1996 Male, age 80, right hemisphere 6.6
2772 Female, age 79, unknown 6.6
2567 Female, age 72, unknown 6.4
2646 Male, age 61, right hemisphere 6.4
Globus pallidus, internus
nTPM: 6.8
2287 Male, age 75, right hemisphere 7.2
2483 Female, age 94, right hemisphere 7.2
2037 Male, age 80, right hemisphere 7.1
2111 Female, age 85, right hemisphere 7.0
2778 Female, age 91, both hemispheres 6.6
1818 Male, age 74, unknown 6.3
2566 Female, age 72, unknown 6.0
Nucleus accumbens
nTPM: 7.6
1783 Male, age 74, unknown 9.1
1806 Female, age 85, left hemisphere 8.3
2824 Male, age 61, right hemisphere 8.0
1856 Female, age 91, right hemisphere 7.7
2286 Male, age 75, left hemisphere 7.5
2698 Female, age 72, unknown 6.8
2391 Female, age 94, left hemisphere 6.7
2732 Male, age 80, right hemisphere 6.5
Nucleus basalis of Meynert
nTPM: 6.8
2393 Male, age 80, right hemisphere 7.5
2484 Female, age 94, left hemisphere 6.7
2821 Male, age 75, both hemispheres 6.7
2569 Male, age 61, both hemispheres 6.3
Nucleus of the diagonal band
nTPM: 6.4
1812 Female, age 91, both hemispheres 6.6
2195 Female, age 85, both hemispheres 6.5
1979 Male, age 74, unknown 6.3
2029 Male, age 61, right hemisphere 6.3
2775 Male, age 80, right hemisphere 6.2
Olfactory tubercle
nTPM: 6.2
2856 Male, age 75, right hemisphere 6.5
1846 Male, age 80, right hemisphere 6.1
1998 Female, age 91, both hemispheres 6.1
2487 Female, age 94, left hemisphere 6.1
Putamen
nTPM: 7.8
2466 Female, age 79, unknown 9.0
1838 Male, age 80, right hemisphere 8.7
1829 Male, age 74, unknown 8.5
2489 Female, age 72, unknown 7.7
2482 Female, age 94, left hemisphere 7.0
2647 Male, age 75, left hemisphere 7.0
1937 Female, age 91, right hemisphere 6.8
Septal nuclei
nTPM: 6.3
2394 Male, age 61, left hemisphere 6.7
1960 Male, age 74, unknown 6.6
2031 Female, age 72, unknown 6.5
2629 Female, age 94, right hemisphere 6.4
2009 Female, age 91, both hemispheres 6.2
2059 Female, age 85, both hemispheres 6.1
2199 Male, age 80, right hemisphere 5.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.8
Samples: 246

Max nTPM: 28.2
Min nTPM: 4.9
Std nTPM: 3.2
Median nTPM: 9.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 28.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 26.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 22.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 20.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 19.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 17.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 17.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 17.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 17.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 17.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 16.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.2
Samples: 246

Max nTPM: 20.9
Min nTPM: 4.7
Std nTPM: 2.4
Median nTPM: 8.8
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 20.9
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 16.1
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 15.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 15.5
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 15.4
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 14.9
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 14.9
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 14.8
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 14.5
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 14.4
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 14.0
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Brain - Putamen (basal ganglia)
Average nTPM: 9.4
Samples: 205

Max nTPM: 24.6
Min nTPM: 5.3
Std nTPM: 2.7
Median nTPM: 8.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 24.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 24.4
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 17.5
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 17.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 16.8
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 15.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 15.3
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 15.1
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 14.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 14.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 14.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 42.9
FF:10164-103B2 76 years, female 42.9
Globus pallidus
Scaled Tags Per Million: 36.0
FF:10175-103C4 60 years, female 36.3
FF:10161-103A8 76 years, female 35.7
Nucleus accumbens
Scaled Tags Per Million: 28.8
FF:10037-101F1 23-56 years, mixed 28.8
Putamen
Scaled Tags Per Million: 33.7
FF:10176-103C5 60 years, female 33.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.2
Pig sample Sample description nTPM
Caudate
nTPM: 7.9
Samples: 4

Max nTPM: 9.2
Min nTPM: 7.2
Sample A Female 7.3
Sample B Female 7.2
Sample C Male 9.2
Sample D Male 8.0
Putamen
nTPM: 10.3
Samples: 4

Max nTPM: 14.4
Min nTPM: 8.2
Sample A Female 8.8
Sample B Female 8.2
Sample C Male 14.4
Sample D Male 9.6
Septum
nTPM: 9.1
Samples: 4

Max nTPM: 10.1
Min nTPM: 7.9
Sample A Female 9.2
Sample B Female 7.9
Sample C Male 10.1
Sample D Male 9.3
Ventral pallidum
nTPM: 8.7
Samples: 4

Max nTPM: 9.3
Min nTPM: 8.5
Sample A Female 8.5
Sample B Female 8.5
Sample C Male 9.3
Sample D Male 8.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 33.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 33.4
Samples: 4

Max nTPM: 35.9
Min nTPM: 30.9
Sample A Male 35.9
Sample B Male 34.8
Sample C Female 31.8
Sample D Female 30.9
Septum
nTPM: 29.0
Samples: 4

Max nTPM: 31.7
Min nTPM: 23.0
Sample A Male 23.0
Sample B Male 31.3
Sample C Female 31.7
Sample D Female 29.9
Ventral forebrain
nTPM: 32.7
Samples: 4

Max nTPM: 35.6
Min nTPM: 31.0
Sample A Male 35.6
Sample B Male 31.3
Sample C Female 33.0
Sample D Female 31.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
587421 Antisense, RP_040831_01_F05, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
587421 Antisense, RP_040831_01_F05, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.