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PNO1
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.0 nTPM
HPA:12.0 nTPM
GTEx:12.5 nTPM
FANTOM5:36.5 Scaled Tags Per Million
Pig:9.4 nTPM
Mouse:37.8 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 12.0
Sample id Sample description nTPM
Hippocampus
nTPM: 8.2
1911 Female, age 85, right hemisphere 10.0
2621 Female, age 67, right hemisphere 9.9
1855 Male, age 76, left hemisphere 8.3
1898 Male, age 80, left hemisphere 7.3
2148 Female, age 91, left hemisphere 7.1
2529 Female, age 94, left hemisphere 6.8
Dentate gyrus
nTPM: 8.7
2010 Male, age 76, both hemispheres 11.3
1927 Female, age 91, both hemispheres 10.2
2530 Female, age 94, left hemisphere 8.4
2246 Female, age 85, both hemispheres 8.3
2528 Male, age 74, both hemispheres 7.2
2531 Female, age 67, both hemispheres 7.0
Entorhinal gyrus
nTPM: 6.3
1938 Female, age 85, left hemisphere 6.6
1787 Male, age 76, left hemisphere 6.5
2117 Female, age 91, right hemisphere 6.3
2613 Female, age 94, left hemisphere 6.2
2686 Male, age 75, right hemisphere 6.2
2764 Male, age 80, right hemisphere 6.0
Hippocampus, CA1
nTPM: 12.0
2749 Male, age 80, left hemisphere 24.8
1873 Female, age 85, both hemispheres 10.6
2527 Male, age 74, both hemispheres 8.9
2045 Male, age 76, both hemispheres 8.8
2082 Female, age 91, right hemisphere 6.8
Hippocampus, CA2
nTPM: 9.0
1892 Male, age 76, both hemispheres 13.5
1963 Male, age 80, left hemisphere 12.3
2249 Male, age 74, both hemispheres 9.1
2113 Female, age 91, right hemisphere 6.5
1940 Female, age 85, left hemisphere 6.4
2437 Female, age 94, left hemisphere 6.2
Hippocampus, CA3
nTPM: 10.6
2137 Male, age 80, left hemisphere 21.0
1867 Male, age 76, both hemispheres 12.2
2620 Female, age 94, left hemisphere 8.0
1891 Female, age 85, both hemispheres 7.8
2861 Female, age 67, both hemispheres 7.8
2436 Male, age 74, both hemispheres 7.0
Parahippocampal cortex
nTPM: 6.6
2018 Male, age 76, both hemispheres 8.0
2245 Female, age 91, both hemispheres 8.0
2692 Male, age 74, both hemispheres 6.7
1850 Male, age 80, both hemispheres 6.6
1933 Female, age 85, both hemispheres 6.6
2250 Female, age 67, right hemisphere 6.4
2622 Female, age 67, right hemisphere 6.3
2693 Female, age 94, both hemispheres 6.0
1990 Female, age 91, right hemisphere 5.8
2532 Female, age 72, left hemisphere 5.5
Perirhinal gyrus
nTPM: 6.5
1841 Female, age 85, right hemisphere 6.8
1794 Male, age 80, right hemisphere 6.7
2521 Female, age 94, right hemisphere 6.6
1847 Female, age 91, left hemisphere 6.3
2848 Male, age 76, right hemisphere 6.2
Subiculum
nTPM: 8.0
2042 Male, age 76, both hemispheres 12.3
1901 Male, age 80, both hemispheres 10.7
1977 Female, age 85, both hemispheres 6.8
2619 Male, age 74, both hemispheres 6.7
2729 Female, age 91, right hemisphere 6.4
2438 Female, age 94, left hemisphere 5.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.5
Samples: 197

Max nTPM: 37.7
Min nTPM: 4.0
Std nTPM: 7.4
Median nTPM: 10.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 37.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 37.0
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 36.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 35.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 34.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 33.0
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 32.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 31.5
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 30.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 29.7
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 29.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 36.5
FF:10169-103B7 60 years, female 43.9
FF:10153-102I9 76 years, female 29.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 9.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 9.4
Samples: 4

Max nTPM: 10.9
Min nTPM: 8.4
Sample A Female 10.9
Sample B Female 8.4
Sample C Male 9.9
Sample D Male 8.4
Entorhinal cortex
nTPM: 7.7
Samples: 4

Max nTPM: 8.5
Min nTPM: 7.0
Sample A Female 7.8
Sample B Female 8.5
Sample C Male 7.6
Sample D Male 7.0
Subiculum
nTPM: 7.6
Samples: 4

Max nTPM: 8.7
Min nTPM: 7.1
Sample A Female 8.7
Sample B Female 7.3
Sample C Male 7.1
Sample D Male 7.3
Ventral hippocampus
nTPM: 7.9
Samples: 4

Max nTPM: 9.4
Min nTPM: 6.1
Sample A Female 8.0
Sample B Female 6.1
Sample C Male 8.1
Sample D Male 9.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 37.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 30.3
Samples: 4

Max nTPM: 33.2
Min nTPM: 25.4
Sample A Male 33.2
Sample B Male 31.8
Sample C Female 30.8
Sample D Female 25.4
Hippocampal formation
nTPM: 37.8
Samples: 4

Max nTPM: 42.5
Min nTPM: 35.2
Sample A Male 42.5
Sample B Male 36.8
Sample C Female 36.8
Sample D Female 35.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
587421 Antisense, RP_040831_01_F05, Mouse strain C57BL/6J (56 days, male) 0.7

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