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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.4 nTPM
HPA:39.4 nTPM
GTEx:29.2 nTPM
FANTOM5:41.4 Scaled Tags Per Million
Pig:10.1 nTPM
Mouse:16.4 nTPM
Allen mouse:0.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.9
1854 Male, age 80, left hemisphere 36.0
2290 Female, age 72, unknown 35.6
1857 Female, age 85, left hemisphere 34.8
1781 Male, age 74, unknown 34.3
2289 Male, age 61, right hemisphere 34.2
2846 Female, age 79, unknown 33.1
2288 Male, age 75, left hemisphere 32.9
2481 Female, age 94, left hemisphere 30.2
Claustrum
nTPM: 35.6
2491 Male, age 75, both hemispheres 37.0
2568 Male, age 61, both hemispheres 36.7
2645 Female, age 72, unknown 36.4
2198 Male, age 80, both hemispheres 36.3
2284 Female, age 91, both hemispheres 35.4
2196 Female, age 79, unknown 35.1
2292 Female, age 85, both hemispheres 34.9
2392 Female, age 94, both hemispheres 34.5
1956 Male, age 74, unknown 34.0
Globus pallidus, externus
nTPM: 39.4
2772 Female, age 79, unknown 43.8
2567 Female, age 72, unknown 40.0
1996 Male, age 80, right hemisphere 38.9
2395 Male, age 75, both hemispheres 38.9
2646 Male, age 61, right hemisphere 35.6
Globus pallidus, internus
nTPM: 38.2
2778 Female, age 91, both hemispheres 40.3
2287 Male, age 75, right hemisphere 39.7
2111 Female, age 85, right hemisphere 39.5
2037 Male, age 80, right hemisphere 38.1
1818 Male, age 74, unknown 37.8
2566 Female, age 72, unknown 37.8
2483 Female, age 94, right hemisphere 34.0
Nucleus accumbens
nTPM: 33.7
2824 Male, age 61, right hemisphere 35.1
2286 Male, age 75, left hemisphere 34.3
1783 Male, age 74, unknown 34.0
1806 Female, age 85, left hemisphere 33.9
1856 Female, age 91, right hemisphere 33.8
2732 Male, age 80, right hemisphere 33.7
2698 Female, age 72, unknown 32.9
2391 Female, age 94, left hemisphere 32.3
Nucleus basalis of Meynert
nTPM: 34.8
2569 Male, age 61, both hemispheres 36.0
2821 Male, age 75, both hemispheres 35.4
2393 Male, age 80, right hemisphere 34.1
2484 Female, age 94, left hemisphere 33.8
Nucleus of the diagonal band
nTPM: 34.1
2029 Male, age 61, right hemisphere 35.6
2775 Male, age 80, right hemisphere 35.2
1812 Female, age 91, both hemispheres 34.0
2195 Female, age 85, both hemispheres 33.0
1979 Male, age 74, unknown 32.4
Olfactory tubercle
nTPM: 34.5
2487 Female, age 94, left hemisphere 35.4
1998 Female, age 91, both hemispheres 34.9
1846 Male, age 80, right hemisphere 34.7
2856 Male, age 75, right hemisphere 33.0
Putamen
nTPM: 33.8
2647 Male, age 75, left hemisphere 36.1
1838 Male, age 80, right hemisphere 34.9
2466 Female, age 79, unknown 34.4
1937 Female, age 91, right hemisphere 34.1
1829 Male, age 74, unknown 32.7
2482 Female, age 94, left hemisphere 32.3
2489 Female, age 72, unknown 32.1
Septal nuclei
nTPM: 33.7
2031 Female, age 72, unknown 36.2
2394 Male, age 61, left hemisphere 35.0
1960 Male, age 74, unknown 33.8
2199 Male, age 80, right hemisphere 33.2
2059 Female, age 85, both hemispheres 32.7
2629 Female, age 94, right hemisphere 32.7
2009 Female, age 91, both hemispheres 32.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.1
Samples: 246

Max nTPM: 56.7
Min nTPM: 13.7
Std nTPM: 5.3
Median nTPM: 25.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 56.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 42.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 40.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 38.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 38.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 38.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 38.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 38.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 37.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 36.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 36.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.2
Samples: 246

Max nTPM: 73.6
Min nTPM: 15.5
Std nTPM: 8.3
Median nTPM: 27.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 73.6
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 57.6
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 56.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 55.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 55.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 53.0
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 49.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 48.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 47.7
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 47.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 45.6
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Brain - Putamen (basal ganglia)
Average nTPM: 28.9
Samples: 205

Max nTPM: 54.1
Min nTPM: 15.1
Std nTPM: 6.1
Median nTPM: 28.2
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 54.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 52.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 46.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 44.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 42.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 41.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 41.4
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 40.6
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 40.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 40.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 40.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.0
FF:10164-103B2 76 years, female 32.0
Globus pallidus
Scaled Tags Per Million: 41.4
FF:10175-103C4 60 years, female 43.4
FF:10161-103A8 76 years, female 39.5
Nucleus accumbens
Scaled Tags Per Million: 38.8
FF:10037-101F1 23-56 years, mixed 38.8
Putamen
Scaled Tags Per Million: 31.8
FF:10176-103C5 60 years, female 31.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.1
Pig sample Sample description nTPM
Caudate
nTPM: 4.6
Samples: 4

Max nTPM: 5.6
Min nTPM: 3.8
Sample A Female 4.4
Sample B Female 5.6
Sample C Male 4.7
Sample D Male 3.8
Putamen
nTPM: 7.5
Samples: 4

Max nTPM: 10.8
Min nTPM: 4.6
Sample A Female 10.8
Sample B Female 4.6
Sample C Male 6.5
Sample D Male 8.1
Septum
nTPM: 10.1
Samples: 4

Max nTPM: 19.8
Min nTPM: 6.1
Sample A Female 6.1
Sample B Female 6.4
Sample C Male 19.8
Sample D Male 8.0
Ventral pallidum
nTPM: 9.2
Samples: 4

Max nTPM: 18.1
Min nTPM: 3.1
Sample A Female 3.1
Sample B Female 7.4
Sample C Male 18.1
Sample D Male 8.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 16.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.2
Samples: 4

Max nTPM: 14.7
Min nTPM: 13.4
Sample A Male 14.7
Sample B Male 14.3
Sample C Female 13.4
Sample D Female 14.2
Septum
nTPM: 16.1
Samples: 4

Max nTPM: 17.5
Min nTPM: 15.4
Sample A Male 15.6
Sample B Male 15.4
Sample C Female 17.5
Sample D Female 16.0
Ventral forebrain
nTPM: 16.4
Samples: 4

Max nTPM: 17.6
Min nTPM: 14.7
Sample A Male 16.5
Sample B Male 17.6
Sample C Female 16.9
Sample D Female 14.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
69817793 Antisense, RP_050510_03_G08, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.8
69817793 Antisense, RP_050510_03_G08, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.