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QSOX1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.7 nTPM
HPA:40.7 nTPM
GTEx:39.1 nTPM
FANTOM5:36.0 Scaled Tags Per Million
Pig:21.5 nTPM
Mouse:18.3 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.0
2666 Male, age 74, left hemisphere 46.0
2586 Male, age 75, left hemisphere 45.4
2411 Female, age 72, unknown 43.1
2019 Male, age 18, unknown 43.0
1870 Female, age 42, unknown 39.7
1830 Male, age 51, unknown 39.5
2828 Female, age 72, unknown 37.2
1833 Male, age 53, unknown 37.1
1827 Male, age 72, unknown 36.2
2219 Male, age 76, both hemispheres 32.7
Dorsal raphe nucleus
nTPM: 37.8
2750 Male, age 76, both hemispheres 41.4
2047 Male, age 72, unknown 39.1
2298 Female, age 72, unknown 37.7
1828 Male, age 53, unknown 37.4
2016 Female, age 72, unknown 33.5
Inferior colliculus
nTPM: 35.0
1890 Male, age 53, unknown 36.3
1848 Female, age 42, unknown 35.4
2097 Female, age 72, unknown 34.3
2849 Male, age 72, unknown 34.2
Median raphe nucleus
nTPM: 36.0
2220 Male, age 76, midline 36.0
Pedunculopontine tegmental nucleus
nTPM: 38.6
2334 Male, age 80, both hemispheres 39.8
2338 Male, age 61, both hemispheres 39.1
1921 Female, age 85, both hemispheres 36.7
Periaquaductal grey, anterior
nTPM: 36.4
1947 Male, age 18, unknown 37.4
2502 Female, age 75, unknown 36.3
1795 Male, age 51, unknown 35.7
Periaquaductal grey, dorsal
nTPM: 34.1
2464 Female, age 72, unknown 35.2
1840 Male, age 53, unknown 35.0
1831 Male, age 72, unknown 34.3
2850 Male, age 76, both hemispheres 31.9
Periaquaductal grey, lateral
nTPM: 32.7
2053 Male, age 18, unknown 33.0
2272 Male, age 74, both hemispheres 32.8
2140 Male, age 76, both hemispheres 32.3
Pretectal area
nTPM: 35.7
1817 Female, age 42, unknown 40.4
2007 Male, age 72, unknown 39.5
2825 Male, age 18, unknown 37.1
1816 Male, age 51, unknown 36.9
2224 Female, age 72, unknown 35.8
1815 Male, age 53, unknown 34.9
2407 Male, age 75, both hemispheres 34.5
2667 Female, age 75, unknown 34.4
1944 Female, age 72, unknown 33.3
2316 Male, age 76, right hemisphere 33.1
2273 Male, age 74, both hemispheres 32.6
Red nucleus
nTPM: 40.7
2588 Male, age 74, left hemisphere 45.4
2584 Male, age 75, left hemisphere 42.8
2227 Male, age 72, unknown 42.2
2769 Male, age 72, unknown 42.0
1865 Male, age 51, unknown 41.7
1821 Female, age 72, unknown 41.5
1904 Male, age 53, unknown 41.5
2785 Male, age 18, unknown 40.4
1954 Female, age 42, unknown 39.9
2823 Male, age 76, right hemisphere 39.4
2725 Female, age 75, unknown 36.4
2503 Female, age 72, unknown 35.7
Substantia nigra
nTPM: 37.4
2583 Male, age 75, right hemisphere 42.1
2665 Male, age 74, both hemispheres 39.8
1941 Male, age 53, unknown 38.9
1916 Female, age 42, unknown 38.5
2590 Female, age 75, unknown 38.3
1889 Female, age 72, unknown 37.7
1851 Male, age 51, unknown 37.4
2241 Male, age 72, unknown 35.1
2409 Female, age 72, unknown 33.2
2699 Male, age 18, unknown 32.8
Superior colliculus
nTPM: 35.3
2668 Female, age 75, unknown 39.5
1839 Male, age 51, unknown 36.4
2587 Male, age 74, left hemisphere 36.2
2664 Male, age 75, both hemispheres 34.7
1895 Male, age 76, right hemisphere 34.6
2261 Male, age 18, unknown 34.6
2087 Female, age 72, unknown 34.5
1796 Male, age 53, unknown 34.3
1913 Female, age 42, unknown 34.3
1995 Male, age 72, unknown 33.9
Ventral tegmental area
nTPM: 39.3
2223 Female, age 72, unknown 49.9
2410 Female, age 72, unknown 38.8
2021 Male, age 53, unknown 38.2
1915 Female, age 42, unknown 37.2
1942 Male, age 51, unknown 35.9
2218 Male, age 76, both hemispheres 35.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.1
Samples: 139

Max nTPM: 88.8
Min nTPM: 20.0
Std nTPM: 11.7
Median nTPM: 37.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 88.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 79.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 66.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 64.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 63.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 62.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 62.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 62.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 61.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 56.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 55.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.0
FF:10158-103A5 76 years, female 36.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.5
Pig sample Sample description nTPM
Midbrain
nTPM: 18.2
Samples: 4

Max nTPM: 25.8
Min nTPM: 14.9
Sample A Female 25.8
Sample B Female 14.9
Sample C Male 15.6
Sample D Male 16.5
Periaqueductal gray
nTPM: 12.7
Samples: 3

Max nTPM: 13.7
Min nTPM: 11.6
Sample B Female 12.9
Sample C Male 13.7
Sample D Male 11.6
Substantia nigra
nTPM: 20.0
Samples: 4

Max nTPM: 22.3
Min nTPM: 17.9
Sample A Female 22.3
Sample B Female 21.2
Sample C Male 18.6
Sample D Male 17.9
Superior colliculi
nTPM: 21.5
Samples: 4

Max nTPM: 25.4
Min nTPM: 16.1
Sample A Female 24.8
Sample B Female 25.4
Sample C Male 19.7
Sample D Male 16.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.3
Samples: 4

Max nTPM: 19.7
Min nTPM: 17.6
Sample A Male 17.6
Sample B Male 17.6
Sample C Female 19.7
Sample D Female 18.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
69817793 Antisense, RP_050510_03_G08, Mouse strain C57BL/6J (56 days, male) 1.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.