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UFM1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:38.1 nTPM
HPA:38.1 nTPM
GTEx:33.7 nTPM
FANTOM5:129.1 Scaled Tags Per Million
Pig:7.3 nTPM
Mouse:28.0 nTPM
Allen mouse:0.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039758
Glial cells Low
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 38.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.5
2481 Female, age 94, left hemisphere 36.7
2846 Female, age 79, unknown 34.2
1854 Male, age 80, left hemisphere 33.2
1857 Female, age 85, left hemisphere 33.2
2288 Male, age 75, left hemisphere 33.2
2290 Female, age 72, unknown 31.2
1781 Male, age 74, unknown 29.8
2289 Male, age 61, right hemisphere 28.8
Claustrum
nTPM: 33.2
2392 Female, age 94, both hemispheres 36.6
1956 Male, age 74, unknown 36.1
2292 Female, age 85, both hemispheres 34.2
2196 Female, age 79, unknown 34.1
2491 Male, age 75, both hemispheres 33.3
2198 Male, age 80, both hemispheres 33.0
2284 Female, age 91, both hemispheres 31.0
2568 Male, age 61, both hemispheres 30.8
2645 Female, age 72, unknown 29.9
Globus pallidus, externus
nTPM: 36.1
1996 Male, age 80, right hemisphere 40.4
2395 Male, age 75, both hemispheres 37.7
2772 Female, age 79, unknown 36.3
2567 Female, age 72, unknown 34.0
2646 Male, age 61, right hemisphere 32.0
Globus pallidus, internus
nTPM: 38.1
2287 Male, age 75, right hemisphere 42.9
2778 Female, age 91, both hemispheres 38.9
2483 Female, age 94, right hemisphere 38.8
2111 Female, age 85, right hemisphere 38.2
2037 Male, age 80, right hemisphere 37.6
2566 Female, age 72, unknown 35.5
1818 Male, age 74, unknown 35.1
Nucleus accumbens
nTPM: 33.4
2391 Female, age 94, left hemisphere 36.5
2698 Female, age 72, unknown 35.0
2286 Male, age 75, left hemisphere 33.9
1806 Female, age 85, left hemisphere 33.4
1856 Female, age 91, right hemisphere 32.9
2824 Male, age 61, right hemisphere 32.1
2732 Male, age 80, right hemisphere 32.0
1783 Male, age 74, unknown 31.3
Nucleus basalis of Meynert
nTPM: 34.5
2484 Female, age 94, left hemisphere 35.8
2569 Male, age 61, both hemispheres 34.9
2821 Male, age 75, both hemispheres 34.0
2393 Male, age 80, right hemisphere 33.4
Nucleus of the diagonal band
nTPM: 36.5
1979 Male, age 74, unknown 38.5
1812 Female, age 91, both hemispheres 36.9
2775 Male, age 80, right hemisphere 36.2
2029 Male, age 61, right hemisphere 35.7
2195 Female, age 85, both hemispheres 35.3
Olfactory tubercle
nTPM: 34.0
1846 Male, age 80, right hemisphere 37.4
1998 Female, age 91, both hemispheres 33.9
2856 Male, age 75, right hemisphere 32.6
2487 Female, age 94, left hemisphere 32.1
Putamen
nTPM: 33.0
2482 Female, age 94, left hemisphere 36.1
1937 Female, age 91, right hemisphere 34.8
1838 Male, age 80, right hemisphere 33.5
2647 Male, age 75, left hemisphere 32.9
2466 Female, age 79, unknown 32.2
1829 Male, age 74, unknown 31.5
2489 Female, age 72, unknown 30.2
Septal nuclei
nTPM: 35.7
2199 Male, age 80, right hemisphere 39.2
2031 Female, age 72, unknown 37.6
2394 Male, age 61, left hemisphere 37.1
1960 Male, age 74, unknown 36.7
2009 Female, age 91, both hemispheres 36.5
2629 Female, age 94, right hemisphere 31.9
2059 Female, age 85, both hemispheres 30.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 33.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 31.5
Samples: 246

Max nTPM: 58.1
Min nTPM: 20.7
Std nTPM: 5.0
Median nTPM: 30.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 58.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 47.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 47.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 45.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 44.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 44.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 44.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 44.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 42.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 42.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 41.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.4
Samples: 246

Max nTPM: 56.2
Min nTPM: 21.3
Std nTPM: 5.7
Median nTPM: 31.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 56.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 55.9
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 50.1
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 48.1
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 47.7
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 47.3
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 47.0
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 45.7
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 45.5
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 45.3
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 43.9
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Brain - Putamen (basal ganglia)
Average nTPM: 33.7
Samples: 205

Max nTPM: 60.2
Min nTPM: 21.4
Std nTPM: 6.2
Median nTPM: 32.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 60.2
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 58.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 56.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 53.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 52.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 49.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 49.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 49.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 47.0
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 46.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 45.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 129.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 97.1
FF:10164-103B2 76 years, female 97.1
Globus pallidus
Scaled Tags Per Million: 129.1
FF:10175-103C4 60 years, female 140.5
FF:10161-103A8 76 years, female 117.8
Nucleus accumbens
Scaled Tags Per Million: 116.0
FF:10037-101F1 23-56 years, mixed 116.0
Putamen
Scaled Tags Per Million: 111.6
FF:10176-103C5 60 years, female 111.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.3
Pig sample Sample description nTPM
Caudate
nTPM: 6.0
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.5
Sample A Female 6.7
Sample B Female 5.7
Sample C Male 5.9
Sample D Male 5.5
Putamen
nTPM: 6.9
Samples: 4

Max nTPM: 9.4
Min nTPM: 5.9
Sample A Female 5.9
Sample B Female 6.1
Sample C Male 9.4
Sample D Male 6.0
Septum
nTPM: 7.3
Samples: 4

Max nTPM: 10.8
Min nTPM: 5.6
Sample A Female 6.5
Sample B Female 5.6
Sample C Male 6.3
Sample D Male 10.8
Ventral pallidum
nTPM: 5.7
Samples: 4

Max nTPM: 6.5
Min nTPM: 5.0
Sample A Female 6.5
Sample B Female 5.7
Sample C Male 5.0
Sample D Male 5.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 28.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 22.3
Samples: 4

Max nTPM: 24.5
Min nTPM: 20.9
Sample A Male 21.7
Sample B Male 20.9
Sample C Female 24.5
Sample D Female 22.1
Septum
nTPM: 28.0
Samples: 4

Max nTPM: 30.9
Min nTPM: 22.3
Sample A Male 22.3
Sample B Male 30.9
Sample C Female 29.8
Sample D Female 29.1
Ventral forebrain
nTPM: 22.5
Samples: 4

Max nTPM: 24.3
Min nTPM: 21.3
Sample A Male 24.3
Sample B Male 21.3
Sample C Female 22.2
Sample D Female 22.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
72129283 Antisense, RP_051017_03_F04, Mouse strain C57BL/6J (56 days, male) 1.2
69117014 Antisense, RP_050321_01_E12, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.9
72129283 Antisense, RP_051017_03_F04, Mouse strain C57BL/6J (56 days, male) 1.3
69117014 Antisense, RP_050321_01_E12, Mouse strain C57BL/6J (56 days, male) 0.6

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.