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UFM1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:37.6 nTPM
HPA:37.6 nTPM
GTEx:44.0 nTPM
FANTOM5:139.5 Scaled Tags Per Million
Pig:8.9 nTPM
Mouse:29.0 nTPM
Allen mouse:2.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039758
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 37.6
Sample id Sample description nTPM
Hippocampus
nTPM: 35.2
1898 Male, age 80, left hemisphere 41.1
1911 Female, age 85, right hemisphere 38.9
1855 Male, age 76, left hemisphere 36.1
2621 Female, age 67, right hemisphere 34.2
2529 Female, age 94, left hemisphere 32.5
2148 Female, age 91, left hemisphere 28.6
Dentate gyrus
nTPM: 33.9
2010 Male, age 76, both hemispheres 38.4
1927 Female, age 91, both hemispheres 37.4
2530 Female, age 94, left hemisphere 34.6
2246 Female, age 85, both hemispheres 33.8
2528 Male, age 74, both hemispheres 30.2
2531 Female, age 67, both hemispheres 29.4
Entorhinal gyrus
nTPM: 32.5
1938 Female, age 85, left hemisphere 36.5
1787 Male, age 76, left hemisphere 34.4
2117 Female, age 91, right hemisphere 33.1
2764 Male, age 80, right hemisphere 31.6
2686 Male, age 75, right hemisphere 30.1
2613 Female, age 94, left hemisphere 29.0
Hippocampus, CA1
nTPM: 37.4
2749 Male, age 80, left hemisphere 47.6
1873 Female, age 85, both hemispheres 37.0
2045 Male, age 76, both hemispheres 36.2
2527 Male, age 74, both hemispheres 33.3
2082 Female, age 91, right hemisphere 33.2
Hippocampus, CA2
nTPM: 35.9
1892 Male, age 76, both hemispheres 39.6
2437 Female, age 94, left hemisphere 37.8
1963 Male, age 80, left hemisphere 35.5
2249 Male, age 74, both hemispheres 34.7
1940 Female, age 85, left hemisphere 34.4
2113 Female, age 91, right hemisphere 33.4
Hippocampus, CA3
nTPM: 37.6
2137 Male, age 80, left hemisphere 51.8
1867 Male, age 76, both hemispheres 43.3
2436 Male, age 74, both hemispheres 38.1
1891 Female, age 85, both hemispheres 36.2
2620 Female, age 94, left hemisphere 28.7
2861 Female, age 67, both hemispheres 27.5
Parahippocampal cortex
nTPM: 33.9
2018 Male, age 76, both hemispheres 41.7
1933 Female, age 85, both hemispheres 38.1
1850 Male, age 80, both hemispheres 37.6
2250 Female, age 67, right hemisphere 35.3
1990 Female, age 91, right hemisphere 33.5
2245 Female, age 91, both hemispheres 32.3
2693 Female, age 94, both hemispheres 31.1
2692 Male, age 74, both hemispheres 30.8
2532 Female, age 72, left hemisphere 30.6
2622 Female, age 67, right hemisphere 28.1
Perirhinal gyrus
nTPM: 35.0
1847 Female, age 91, left hemisphere 37.2
1794 Male, age 80, right hemisphere 36.5
1841 Female, age 85, right hemisphere 35.6
2848 Male, age 76, right hemisphere 33.0
2521 Female, age 94, right hemisphere 32.6
Subiculum
nTPM: 36.6
1901 Male, age 80, both hemispheres 43.7
2042 Male, age 76, both hemispheres 42.8
1977 Female, age 85, both hemispheres 36.2
2438 Female, age 94, left hemisphere 36.2
2729 Female, age 91, right hemisphere 31.3
2619 Male, age 74, both hemispheres 29.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 44.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 44.0
Samples: 197

Max nTPM: 84.6
Min nTPM: 26.7
Std nTPM: 9.5
Median nTPM: 42.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 84.6
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 75.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 70.9
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 69.9
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 67.8
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 65.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 65.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 64.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 63.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 63.6
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 62.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 139.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 139.5
FF:10169-103B7 60 years, female 171.6
FF:10153-102I9 76 years, female 107.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 8.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 8.5
Samples: 4

Max nTPM: 11.0
Min nTPM: 6.3
Sample A Female 11.0
Sample B Female 8.6
Sample C Male 8.2
Sample D Male 6.3
Entorhinal cortex
nTPM: 6.2
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.0
Sample A Female 7.0
Sample B Female 6.4
Sample C Male 6.5
Sample D Male 5.0
Subiculum
nTPM: 7.1
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.1
Sample A Female 8.2
Sample B Female 6.1
Sample C Male 7.4
Sample D Male 6.8
Ventral hippocampus
nTPM: 8.9
Samples: 4

Max nTPM: 11.1
Min nTPM: 6.7
Sample A Female 11.1
Sample B Female 6.7
Sample C Male 7.8
Sample D Male 9.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 29.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.0
Samples: 4

Max nTPM: 27.3
Min nTPM: 24.3
Sample A Male 27.2
Sample B Male 25.1
Sample C Female 27.3
Sample D Female 24.3
Hippocampal formation
nTPM: 29.0
Samples: 4

Max nTPM: 30.0
Min nTPM: 27.7
Sample A Male 30.0
Sample B Male 27.7
Sample C Female 29.1
Sample D Female 29.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.7
72129283 Antisense, RP_051017_03_F04, Mouse strain C57BL/6J (56 days, male) 4.0
69117014 Antisense, RP_050321_01_E12, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.