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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:6660.5 nTPM
HPA:6660.5 nTPM
GTEx:4528.1 nTPM
FANTOM5:5962.4 Scaled Tags Per Million
Pig:3121.8 nTPM
Mouse:1081.6 nTPM
Allen mouse:16.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA000572Antibody CAB016253
Glial cells Not detectedLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 6660.5
Sample id Sample description nTPM
Hippocampus
nTPM: 6660.5
2529 Female, age 94, left hemisphere 7210.7
1898 Male, age 80, left hemisphere 6793.7
2148 Female, age 91, left hemisphere 6748.8
2621 Female, age 67, right hemisphere 6514.4
1911 Female, age 85, right hemisphere 6419.4
1855 Male, age 76, left hemisphere 6275.8
Dentate gyrus
nTPM: 6271.6
2528 Male, age 74, both hemispheres 7112.2
2530 Female, age 94, left hemisphere 6421.6
2246 Female, age 85, both hemispheres 6393.9
2010 Male, age 76, both hemispheres 6020.7
1927 Female, age 91, both hemispheres 5937.8
2531 Female, age 67, both hemispheres 5743.5
Entorhinal gyrus
nTPM: 6208.3
2117 Female, age 91, right hemisphere 7223.1
1938 Female, age 85, left hemisphere 6563.4
1787 Male, age 76, left hemisphere 6095.3
2764 Male, age 80, right hemisphere 6050.4
2613 Female, age 94, left hemisphere 5746.2
2686 Male, age 75, right hemisphere 5571.2
Hippocampus, CA1
nTPM: 6317.4
2527 Male, age 74, both hemispheres 7393.7
1873 Female, age 85, both hemispheres 6389.4
2082 Female, age 91, right hemisphere 6305.7
2749 Male, age 80, left hemisphere 6019.9
2045 Male, age 76, both hemispheres 5478.5
Hippocampus, CA2
nTPM: 6412.1
2249 Male, age 74, both hemispheres 7531.1
2113 Female, age 91, right hemisphere 6553.3
1940 Female, age 85, left hemisphere 6363.6
2437 Female, age 94, left hemisphere 6341.0
1963 Male, age 80, left hemisphere 5974.6
1892 Male, age 76, both hemispheres 5709.1
Hippocampus, CA3
nTPM: 6217.3
2436 Male, age 74, both hemispheres 7251.7
2620 Female, age 94, left hemisphere 6472.7
1891 Female, age 85, both hemispheres 6194.2
2137 Male, age 80, left hemisphere 5967.0
1867 Male, age 76, both hemispheres 5719.5
2861 Female, age 67, both hemispheres 5698.4
Parahippocampal cortex
nTPM: 6226.4
2250 Female, age 67, right hemisphere 6888.0
1933 Female, age 85, both hemispheres 6427.1
2245 Female, age 91, both hemispheres 6398.6
2622 Female, age 67, right hemisphere 6327.9
1850 Male, age 80, both hemispheres 6300.4
1990 Female, age 91, right hemisphere 6236.9
2692 Male, age 74, both hemispheres 6177.6
2532 Female, age 72, left hemisphere 6011.4
2018 Male, age 76, both hemispheres 5767.5
2693 Female, age 94, both hemispheres 5728.7
Perirhinal gyrus
nTPM: 6210.8
1794 Male, age 80, right hemisphere 6556.7
1847 Female, age 91, left hemisphere 6459.1
1841 Female, age 85, right hemisphere 6392.1
2521 Female, age 94, right hemisphere 5977.0
2848 Male, age 76, right hemisphere 5669.1
Subiculum
nTPM: 6341.0
2729 Female, age 91, right hemisphere 7047.9
2619 Male, age 74, both hemispheres 6885.4
1901 Male, age 80, both hemispheres 6119.9
1977 Female, age 85, both hemispheres 6089.3
2438 Female, age 94, left hemisphere 6050.5
2042 Male, age 76, both hemispheres 5852.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 4528.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 4528.1
Samples: 197

Max nTPM: 16264.7
Min nTPM: 948.1
Std nTPM: 2235.2
Median nTPM: 4091.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 16264.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 11661.8
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 11526.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 11456.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 11245.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 9829.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 8899.9
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 8751.8
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 8572.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 7944.2
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 7935.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 5962.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 5962.4
FF:10169-103B7 60 years, female 6156.7
FF:10153-102I9 76 years, female 5768.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 3121.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 2530.3
Samples: 4

Max nTPM: 3110.9
Min nTPM: 2093.5
Sample A Female 2659.8
Sample B Female 2257.0
Sample C Male 3110.9
Sample D Male 2093.5
Entorhinal cortex
nTPM: 2778.8
Samples: 4

Max nTPM: 3299.3
Min nTPM: 2229.0
Sample A Female 2791.2
Sample B Female 2795.8
Sample C Male 3299.3
Sample D Male 2229.0
Subiculum
nTPM: 3121.8
Samples: 4

Max nTPM: 3594.3
Min nTPM: 2827.2
Sample A Female 3594.3
Sample B Female 3109.0
Sample C Male 2827.2
Sample D Male 2956.5
Ventral hippocampus
nTPM: 2876.8
Samples: 4

Max nTPM: 4044.7
Min nTPM: 2420.5
Sample A Female 2616.6
Sample B Female 2420.5
Sample C Male 4044.7
Sample D Male 2425.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 1081.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1001.5
Samples: 4

Max nTPM: 1081.9
Min nTPM: 885.1
Sample A Male 1054.3
Sample B Male 885.1
Sample C Female 1081.9
Sample D Female 984.8
Hippocampal formation
nTPM: 1081.6
Samples: 4

Max nTPM: 1275.5
Min nTPM: 951.8
Sample A Male 1112.0
Sample B Male 951.8
Sample C Female 987.0
Sample D Female 1275.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 16.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.5
77800883 Antisense, RP_070212_01_A02, Mouse strain C57BL/6J (56 days, male) 21.9
79490114 Antisense, RP_070212_01_A02, Mouse strain C57BL/6J (56 days, male) 17.4
276 Antisense, RP_Baylor_102693, Mouse strain C57BL/6J (56 days, male) 11.0
275 Antisense, RP_Baylor_102693, Mouse strain C57BL/6J (56 days, male) 5.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.