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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8450.9 nTPM
HPA:8450.9 nTPM
GTEx:5838.9 nTPM
FANTOM5:3628.0 Scaled Tags Per Million
Pig:2817.7 nTPM
Mouse:794.6 nTPM
Allen mouse:14.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8450.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6262.1
2828 Female, age 72, unknown 7369.3
2586 Male, age 75, left hemisphere 6955.3
1827 Male, age 72, unknown 6452.7
2019 Male, age 18, unknown 6375.6
1870 Female, age 42, unknown 6358.7
1833 Male, age 53, unknown 6074.9
2666 Male, age 74, left hemisphere 5883.0
1830 Male, age 51, unknown 5855.8
2411 Female, age 72, unknown 5671.3
2219 Male, age 76, both hemispheres 5624.2
Dorsal raphe nucleus
nTPM: 7167.5
2298 Female, age 72, unknown 7939.8
2016 Female, age 72, unknown 7603.9
2047 Male, age 72, unknown 7044.5
1828 Male, age 53, unknown 7022.9
2750 Male, age 76, both hemispheres 6226.3
Inferior colliculus
nTPM: 6832.8
2849 Male, age 72, unknown 7011.9
2097 Female, age 72, unknown 6967.5
1848 Female, age 42, unknown 6855.4
1890 Male, age 53, unknown 6496.1
Median raphe nucleus
nTPM: 6768.6
2220 Male, age 76, midline 6768.6
Pedunculopontine tegmental nucleus
nTPM: 6516.5
2338 Male, age 61, both hemispheres 6766.4
1921 Female, age 85, both hemispheres 6461.4
2334 Male, age 80, both hemispheres 6321.5
Periaquaductal grey, anterior
nTPM: 6933.4
1795 Male, age 51, unknown 7425.7
2502 Female, age 75, unknown 6910.5
1947 Male, age 18, unknown 6464.1
Periaquaductal grey, dorsal
nTPM: 7505.2
2850 Male, age 76, both hemispheres 9103.0
1840 Male, age 53, unknown 7811.5
1831 Male, age 72, unknown 6823.9
2464 Female, age 72, unknown 6282.5
Periaquaductal grey, lateral
nTPM: 8450.9
2272 Male, age 74, both hemispheres 8916.1
2140 Male, age 76, both hemispheres 8642.1
2053 Male, age 18, unknown 7794.5
Pretectal area
nTPM: 7395.5
2273 Male, age 74, both hemispheres 10770.7
2407 Male, age 75, both hemispheres 8380.1
1944 Female, age 72, unknown 7570.6
2667 Female, age 75, unknown 7450.9
1817 Female, age 42, unknown 6960.5
2224 Female, age 72, unknown 6938.1
2825 Male, age 18, unknown 6891.1
1816 Male, age 51, unknown 6866.0
1815 Male, age 53, unknown 6667.3
2316 Male, age 76, right hemisphere 6435.8
2007 Male, age 72, unknown 6419.4
Red nucleus
nTPM: 6180.7
2725 Female, age 75, unknown 6606.0
2227 Male, age 72, unknown 6352.4
2769 Male, age 72, unknown 6341.1
2503 Female, age 72, unknown 6302.9
2785 Male, age 18, unknown 6287.9
1821 Female, age 72, unknown 6253.4
1865 Male, age 51, unknown 6237.7
1904 Male, age 53, unknown 6155.4
1954 Female, age 42, unknown 6141.7
2823 Male, age 76, right hemisphere 6056.6
2584 Male, age 75, left hemisphere 5905.7
2588 Male, age 74, left hemisphere 5527.6
Substantia nigra
nTPM: 6375.4
2699 Male, age 18, unknown 7227.4
1916 Female, age 42, unknown 6763.9
1851 Male, age 51, unknown 6647.2
1889 Female, age 72, unknown 6583.1
1941 Male, age 53, unknown 6488.2
2409 Female, age 72, unknown 6333.1
2241 Male, age 72, unknown 6107.3
2590 Female, age 75, unknown 6074.6
2583 Male, age 75, right hemisphere 5899.1
2665 Male, age 74, both hemispheres 5630.4
Superior colliculus
nTPM: 6884.8
2664 Male, age 75, both hemispheres 7803.5
1995 Male, age 72, unknown 7516.2
2087 Female, age 72, unknown 7222.6
2587 Male, age 74, left hemisphere 7055.6
1913 Female, age 42, unknown 6963.4
1796 Male, age 53, unknown 6955.0
2261 Male, age 18, unknown 6671.7
2668 Female, age 75, unknown 6448.8
1839 Male, age 51, unknown 6376.7
1895 Male, age 76, right hemisphere 5834.3
Ventral tegmental area
nTPM: 6625.7
2021 Male, age 53, unknown 7016.7
1942 Male, age 51, unknown 6970.9
1915 Female, age 42, unknown 6825.6
2223 Female, age 72, unknown 6524.8
2218 Male, age 76, both hemispheres 6394.5
2410 Female, age 72, unknown 6021.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5838.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5838.9
Samples: 139

Max nTPM: 19960.2
Min nTPM: 1211.4
Std nTPM: 3649.0
Median nTPM: 4725.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 19960.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 17175.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 16411.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 16273.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 16062.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 14269.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 14234.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 13888.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 12824.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 12732.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 12058.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3628.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3628.0
FF:10158-103A5 76 years, female 3628.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 2817.7
Pig sample Sample description nTPM
Midbrain
nTPM: 2545.2
Samples: 4

Max nTPM: 3505.7
Min nTPM: 1639.8
Sample A Female 3505.7
Sample B Female 2429.5
Sample C Male 2605.7
Sample D Male 1639.8
Periaqueductal gray
nTPM: 2661.5
Samples: 3

Max nTPM: 2903.9
Min nTPM: 2342.7
Sample B Female 2738.0
Sample C Male 2903.9
Sample D Male 2342.7
Substantia nigra
nTPM: 2533.9
Samples: 4

Max nTPM: 2761.2
Min nTPM: 2372.0
Sample A Female 2761.2
Sample B Female 2457.1
Sample C Male 2372.0
Sample D Male 2545.2
Superior colliculi
nTPM: 2817.8
Samples: 4

Max nTPM: 3675.1
Min nTPM: 2171.1
Sample A Female 3117.9
Sample B Female 3675.1
Sample C Male 2306.9
Sample D Male 2171.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 794.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 794.6
Samples: 4

Max nTPM: 869.7
Min nTPM: 751.8
Sample A Male 869.7
Sample B Male 751.8
Sample C Female 793.0
Sample D Female 763.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.3
77800883 Antisense, RP_070212_01_A02, Mouse strain C57BL/6J (56 days, male) 22.0
79490114 Antisense, RP_070212_01_A02, Mouse strain C57BL/6J (56 days, male) 16.2
276 Antisense, RP_Baylor_102693, Mouse strain C57BL/6J (56 days, male) 6.5
275 Antisense, RP_Baylor_102693, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.