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GJB6
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.4 nTPM
HPA:59.4 nTPM
GTEx:64.6 nTPM
FANTOM5:68.5 Scaled Tags Per Million
Pig:18.5 nTPM
Mouse:62.0 nTPM
Allen mouse:1.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 59.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 52.0
2481 Female, age 94, left hemisphere 59.0
1857 Female, age 85, left hemisphere 56.9
2289 Male, age 61, right hemisphere 55.5
2290 Female, age 72, unknown 54.0
2288 Male, age 75, left hemisphere 51.1
1781 Male, age 74, unknown 47.6
1854 Male, age 80, left hemisphere 47.3
2846 Female, age 79, unknown 44.2
Claustrum
nTPM: 38.4
2196 Female, age 79, unknown 43.5
2491 Male, age 75, both hemispheres 41.3
2568 Male, age 61, both hemispheres 40.9
2645 Female, age 72, unknown 39.5
2284 Female, age 91, both hemispheres 38.1
2198 Male, age 80, both hemispheres 37.4
2392 Female, age 94, both hemispheres 36.8
1956 Male, age 74, unknown 35.5
2292 Female, age 85, both hemispheres 32.8
Globus pallidus, externus
nTPM: 59.4
2646 Male, age 61, right hemisphere 79.1
1996 Male, age 80, right hemisphere 74.3
2772 Female, age 79, unknown 57.9
2567 Female, age 72, unknown 43.7
2395 Male, age 75, both hemispheres 42.0
Globus pallidus, internus
nTPM: 55.4
2037 Male, age 80, right hemisphere 72.7
2483 Female, age 94, right hemisphere 62.8
1818 Male, age 74, unknown 61.4
2778 Female, age 91, both hemispheres 55.3
2287 Male, age 75, right hemisphere 53.5
2111 Female, age 85, right hemisphere 41.9
2566 Female, age 72, unknown 40.5
Nucleus accumbens
nTPM: 52.6
2824 Male, age 61, right hemisphere 65.0
2286 Male, age 75, left hemisphere 62.0
1806 Female, age 85, left hemisphere 56.5
1856 Female, age 91, right hemisphere 53.0
1783 Male, age 74, unknown 48.4
2698 Female, age 72, unknown 47.4
2732 Male, age 80, right hemisphere 44.5
2391 Female, age 94, left hemisphere 44.3
Nucleus basalis of Meynert
nTPM: 55.9
2569 Male, age 61, both hemispheres 89.8
2484 Female, age 94, left hemisphere 48.1
2393 Male, age 80, right hemisphere 45.5
2821 Male, age 75, both hemispheres 40.3
Nucleus of the diagonal band
nTPM: 55.9
2775 Male, age 80, right hemisphere 60.2
1979 Male, age 74, unknown 59.4
2029 Male, age 61, right hemisphere 56.6
2195 Female, age 85, both hemispheres 54.1
1812 Female, age 91, both hemispheres 49.1
Olfactory tubercle
nTPM: 51.7
2856 Male, age 75, right hemisphere 58.1
1846 Male, age 80, right hemisphere 51.8
1998 Female, age 91, both hemispheres 48.6
2487 Female, age 94, left hemisphere 48.2
Putamen
nTPM: 46.2
1937 Female, age 91, right hemisphere 51.7
2482 Female, age 94, left hemisphere 50.7
2466 Female, age 79, unknown 47.6
1838 Male, age 80, right hemisphere 45.2
2489 Female, age 72, unknown 43.4
2647 Male, age 75, left hemisphere 43.1
1829 Male, age 74, unknown 41.6
Septal nuclei
nTPM: 55.5
2059 Female, age 85, both hemispheres 71.8
2199 Male, age 80, right hemisphere 62.7
2031 Female, age 72, unknown 53.4
2394 Male, age 61, left hemisphere 52.7
1960 Male, age 74, unknown 52.4
2009 Female, age 91, both hemispheres 49.4
2629 Female, age 94, right hemisphere 46.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 64.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 59.3
Samples: 246

Max nTPM: 168.5
Min nTPM: 2.2
Std nTPM: 29.2
Median nTPM: 54.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 168.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 160.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 152.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 138.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 137.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 129.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 125.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 123.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 122.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 115.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 113.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 64.6
Samples: 246

Max nTPM: 263.6
Min nTPM: 6.6
Std nTPM: 34.8
Median nTPM: 57.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 263.6
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 174.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 171.4
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 163.0
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 158.9
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 146.4
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 141.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 140.3
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 136.2
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 133.3
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 129.7
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Brain - Putamen (basal ganglia)
Average nTPM: 59.3
Samples: 205

Max nTPM: 213.9
Min nTPM: 6.5
Std nTPM: 32.9
Median nTPM: 53.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 213.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 171.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 164.9
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 137.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 134.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 127.1
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 126.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 125.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 122.2
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 121.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 118.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 63.8
FF:10164-103B2 76 years, female 63.8
Globus pallidus
Scaled Tags Per Million: 22.1
FF:10175-103C4 60 years, female 27.6
FF:10161-103A8 76 years, female 16.6
Nucleus accumbens
Scaled Tags Per Million: 47.6
FF:10037-101F1 23-56 years, mixed 47.6
Putamen
Scaled Tags Per Million: 68.5
FF:10176-103C5 60 years, female 68.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 18.5
Pig sample Sample description nTPM
Caudate
nTPM: 9.4
Samples: 4

Max nTPM: 11.5
Min nTPM: 8.1
Sample A Female 8.1
Sample B Female 8.9
Sample C Male 11.5
Sample D Male 9.0
Putamen
nTPM: 18.5
Samples: 4

Max nTPM: 24.4
Min nTPM: 14.8
Sample A Female 18.5
Sample B Female 16.4
Sample C Male 24.4
Sample D Male 14.8
Septum
nTPM: 5.4
Samples: 4

Max nTPM: 6.3
Min nTPM: 4.9
Sample A Female 6.3
Sample B Female 5.3
Sample C Male 4.9
Sample D Male 5.1
Ventral pallidum
nTPM: 9.0
Samples: 4

Max nTPM: 13.3
Min nTPM: 5.6
Sample A Female 7.6
Sample B Female 13.3
Sample C Male 9.3
Sample D Male 5.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 62.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 34.7
Samples: 4

Max nTPM: 39.0
Min nTPM: 30.9
Sample A Male 32.8
Sample B Male 30.9
Sample C Female 39.0
Sample D Female 35.9
Septum
nTPM: 62.0
Samples: 4

Max nTPM: 74.5
Min nTPM: 55.8
Sample A Male 56.8
Sample B Male 55.8
Sample C Female 74.5
Sample D Female 60.9
Ventral forebrain
nTPM: 58.1
Samples: 4

Max nTPM: 77.9
Min nTPM: 42.3
Sample A Male 42.3
Sample B Male 55.7
Sample C Female 77.9
Sample D Female 56.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
2262 Antisense, RP_040420_01_F08, Mouse strain C57BL/6J (56 days, male) 0.5
2261 Antisense, RP_040420_01_F08, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 1.3
2261 Antisense, RP_040420_01_F08, Mouse strain C57BL/6J (56 days, male) 1.3
2262 Antisense, RP_040420_01_F08, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.