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NAA60
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.5 nTPM
HPA:30.5 nTPM
GTEx:30.8 nTPM
FANTOM5:69.5 Scaled Tags Per Million
Pig:24.3 nTPM
Mouse:82.5 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.8
2586 Male, age 75, left hemisphere 37.3
2019 Male, age 18, unknown 31.7
1830 Male, age 51, unknown 30.0
2828 Female, age 72, unknown 30.0
2666 Male, age 74, left hemisphere 29.8
1833 Male, age 53, unknown 29.4
2411 Female, age 72, unknown 28.6
1827 Male, age 72, unknown 28.5
1870 Female, age 42, unknown 27.2
2219 Male, age 76, both hemispheres 25.4
Dorsal raphe nucleus
nTPM: 26.2
2750 Male, age 76, both hemispheres 28.5
2047 Male, age 72, unknown 27.9
1828 Male, age 53, unknown 26.3
2298 Female, age 72, unknown 24.6
2016 Female, age 72, unknown 23.9
Inferior colliculus
nTPM: 28.5
2849 Male, age 72, unknown 31.0
1890 Male, age 53, unknown 27.8
2097 Female, age 72, unknown 27.7
1848 Female, age 42, unknown 27.6
Median raphe nucleus
nTPM: 25.4
2220 Male, age 76, midline 25.4
Pedunculopontine tegmental nucleus
nTPM: 24.7
1921 Female, age 85, both hemispheres 25.0
2334 Male, age 80, both hemispheres 24.9
2338 Male, age 61, both hemispheres 24.2
Periaquaductal grey, anterior
nTPM: 28.9
2502 Female, age 75, unknown 30.3
1947 Male, age 18, unknown 29.3
1795 Male, age 51, unknown 27.1
Periaquaductal grey, dorsal
nTPM: 26.2
2464 Female, age 72, unknown 27.2
1831 Male, age 72, unknown 26.8
1840 Male, age 53, unknown 26.4
2850 Male, age 76, both hemispheres 24.5
Periaquaductal grey, lateral
nTPM: 24.6
2140 Male, age 76, both hemispheres 25.6
2053 Male, age 18, unknown 25.1
2272 Male, age 74, both hemispheres 23.2
Pretectal area
nTPM: 28.3
2007 Male, age 72, unknown 32.8
1817 Female, age 42, unknown 31.2
1816 Male, age 51, unknown 31.0
2407 Male, age 75, both hemispheres 30.9
1944 Female, age 72, unknown 30.5
1815 Male, age 53, unknown 29.2
2825 Male, age 18, unknown 27.1
2667 Female, age 75, unknown 26.2
2316 Male, age 76, right hemisphere 25.8
2224 Female, age 72, unknown 23.5
2273 Male, age 74, both hemispheres 23.5
Red nucleus
nTPM: 30.5
2584 Male, age 75, left hemisphere 36.1
2588 Male, age 74, left hemisphere 33.3
1904 Male, age 53, unknown 32.8
2785 Male, age 18, unknown 32.0
2823 Male, age 76, right hemisphere 31.5
2227 Male, age 72, unknown 30.6
2769 Male, age 72, unknown 30.1
1954 Female, age 42, unknown 29.5
1865 Male, age 51, unknown 28.5
1821 Female, age 72, unknown 27.9
2503 Female, age 72, unknown 27.4
2725 Female, age 75, unknown 25.9
Substantia nigra
nTPM: 27.7
2583 Male, age 75, right hemisphere 33.6
2590 Female, age 75, unknown 30.3
1889 Female, age 72, unknown 29.0
2665 Male, age 74, both hemispheres 29.0
2409 Female, age 72, unknown 27.8
1851 Male, age 51, unknown 26.8
1941 Male, age 53, unknown 26.7
2699 Male, age 18, unknown 26.7
1916 Female, age 42, unknown 24.9
2241 Male, age 72, unknown 22.3
Superior colliculus
nTPM: 29.4
2664 Male, age 75, both hemispheres 36.4
2668 Female, age 75, unknown 31.9
1839 Male, age 51, unknown 29.8
1913 Female, age 42, unknown 29.1
2087 Female, age 72, unknown 29.0
1895 Male, age 76, right hemisphere 28.6
1796 Male, age 53, unknown 28.4
1995 Male, age 72, unknown 27.2
2587 Male, age 74, left hemisphere 26.9
2261 Male, age 18, unknown 26.7
Ventral tegmental area
nTPM: 26.5
2223 Female, age 72, unknown 29.0
1942 Male, age 51, unknown 27.3
2410 Female, age 72, unknown 26.2
2218 Male, age 76, both hemispheres 25.9
2021 Male, age 53, unknown 25.7
1915 Female, age 42, unknown 25.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.8
Samples: 139

Max nTPM: 46.8
Min nTPM: 22.2
Std nTPM: 4.7
Median nTPM: 29.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 46.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 43.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 41.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 40.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 39.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 39.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 38.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 38.9
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 38.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 38.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 38.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.5
FF:10158-103A5 76 years, female 69.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.3
Pig sample Sample description nTPM
Midbrain
nTPM: 22.2
Samples: 4

Max nTPM: 25.1
Min nTPM: 17.4
Sample A Female 25.1
Sample B Female 17.4
Sample C Male 23.8
Sample D Male 22.4
Periaqueductal gray
nTPM: 17.6
Samples: 3

Max nTPM: 19.5
Min nTPM: 16.5
Sample B Female 16.8
Sample C Male 19.5
Sample D Male 16.5
Substantia nigra
nTPM: 20.4
Samples: 4

Max nTPM: 21.2
Min nTPM: 19.1
Sample A Female 21.2
Sample B Female 19.1
Sample C Male 20.4
Sample D Male 20.7
Superior colliculi
nTPM: 24.3
Samples: 4

Max nTPM: 26.8
Min nTPM: 21.2
Sample A Female 25.0
Sample B Female 26.8
Sample C Male 21.2
Sample D Male 24.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 82.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 82.5
Samples: 4

Max nTPM: 84.8
Min nTPM: 79.5
Sample A Male 80.9
Sample B Male 79.5
Sample C Female 84.7
Sample D Female 84.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
67979034 Antisense, RP_040923_02_B04, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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