ABOUTMENU
HELP
NEWS
SRGN
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.3 nTPM
HPA:59.3 nTPM
GTEx:85.6 nTPM
FANTOM5:248.6 Scaled Tags Per Million
Pig:20.7 nTPM
Mouse:19.2 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.8
2019 Male, age 18, unknown 51.6
1870 Female, age 42, unknown 51.0
2411 Female, age 72, unknown 47.5
1830 Male, age 51, unknown 47.3
2828 Female, age 72, unknown 47.1
1833 Male, age 53, unknown 47.0
2666 Male, age 74, left hemisphere 45.6
1827 Male, age 72, unknown 43.7
2219 Male, age 76, both hemispheres 39.1
2586 Male, age 75, left hemisphere 38.0
Dorsal raphe nucleus
nTPM: 49.8
2298 Female, age 72, unknown 59.6
2016 Female, age 72, unknown 50.7
1828 Male, age 53, unknown 47.5
2750 Male, age 76, both hemispheres 46.5
2047 Male, age 72, unknown 44.7
Inferior colliculus
nTPM: 47.4
2097 Female, age 72, unknown 51.9
1890 Male, age 53, unknown 48.1
1848 Female, age 42, unknown 46.8
2849 Male, age 72, unknown 42.9
Median raphe nucleus
nTPM: 46.8
2220 Male, age 76, midline 46.8
Pedunculopontine tegmental nucleus
nTPM: 59.3
2338 Male, age 61, both hemispheres 77.8
2334 Male, age 80, both hemispheres 54.2
1921 Female, age 85, both hemispheres 46.0
Periaquaductal grey, anterior
nTPM: 48.7
2502 Female, age 75, unknown 53.3
1795 Male, age 51, unknown 46.9
1947 Male, age 18, unknown 45.8
Periaquaductal grey, dorsal
nTPM: 48.5
1831 Male, age 72, unknown 52.0
2850 Male, age 76, both hemispheres 51.0
2464 Female, age 72, unknown 47.4
1840 Male, age 53, unknown 43.5
Periaquaductal grey, lateral
nTPM: 51.2
2272 Male, age 74, both hemispheres 54.1
2140 Male, age 76, both hemispheres 50.3
2053 Male, age 18, unknown 49.3
Pretectal area
nTPM: 48.5
2224 Female, age 72, unknown 57.2
2316 Male, age 76, right hemisphere 51.5
2273 Male, age 74, both hemispheres 51.4
1817 Female, age 42, unknown 50.9
2667 Female, age 75, unknown 48.0
2007 Male, age 72, unknown 47.7
1944 Female, age 72, unknown 46.8
1815 Male, age 53, unknown 46.7
2407 Male, age 75, both hemispheres 44.8
2825 Male, age 18, unknown 44.4
1816 Male, age 51, unknown 44.0
Red nucleus
nTPM: 49.6
1954 Female, age 42, unknown 55.9
1821 Female, age 72, unknown 53.0
1904 Male, age 53, unknown 51.8
1865 Male, age 51, unknown 51.6
2227 Male, age 72, unknown 51.3
2769 Male, age 72, unknown 51.2
2785 Male, age 18, unknown 51.0
2503 Female, age 72, unknown 48.9
2725 Female, age 75, unknown 47.3
2823 Male, age 76, right hemisphere 47.2
2588 Male, age 74, left hemisphere 45.0
2584 Male, age 75, left hemisphere 41.4
Substantia nigra
nTPM: 48.9
2665 Male, age 74, both hemispheres 59.2
1851 Male, age 51, unknown 51.1
2409 Female, age 72, unknown 51.1
2241 Male, age 72, unknown 49.7
2699 Male, age 18, unknown 48.6
2590 Female, age 75, unknown 48.3
1889 Female, age 72, unknown 46.5
1916 Female, age 42, unknown 46.5
1941 Male, age 53, unknown 45.7
2583 Male, age 75, right hemisphere 42.4
Superior colliculus
nTPM: 47.1
2587 Male, age 74, left hemisphere 53.8
1913 Female, age 42, unknown 50.3
1995 Male, age 72, unknown 49.9
1796 Male, age 53, unknown 49.7
2087 Female, age 72, unknown 47.9
2261 Male, age 18, unknown 46.2
1839 Male, age 51, unknown 45.5
2668 Female, age 75, unknown 44.6
1895 Male, age 76, right hemisphere 43.2
2664 Male, age 75, both hemispheres 40.2
Ventral tegmental area
nTPM: 49.9
2021 Male, age 53, unknown 52.0
1915 Female, age 42, unknown 51.5
2218 Male, age 76, both hemispheres 49.9
1942 Male, age 51, unknown 49.4
2223 Female, age 72, unknown 48.8
2410 Female, age 72, unknown 47.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 85.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.6
Samples: 139

Max nTPM: 377.1
Min nTPM: 13.7
Std nTPM: 58.8
Median nTPM: 63.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 377.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 260.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 256.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 243.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 219.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 219.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 213.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 199.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 192.6
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 186.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 185.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 248.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 248.6
FF:10158-103A5 76 years, female 248.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.7
Pig sample Sample description nTPM
Midbrain
nTPM: 12.3
Samples: 4

Max nTPM: 18.0
Min nTPM: 9.8
Sample A Female 10.5
Sample B Female 18.0
Sample C Male 9.8
Sample D Male 10.9
Periaqueductal gray
nTPM: 20.7
Samples: 3

Max nTPM: 29.8
Min nTPM: 13.8
Sample B Female 13.8
Sample C Male 29.8
Sample D Male 18.6
Substantia nigra
nTPM: 16.8
Samples: 4

Max nTPM: 24.5
Min nTPM: 11.4
Sample A Female 11.4
Sample B Female 24.5
Sample C Male 19.1
Sample D Male 12.2
Superior colliculi
nTPM: 14.0
Samples: 4

Max nTPM: 14.7
Min nTPM: 13.1
Sample A Female 13.7
Sample B Female 14.5
Sample C Male 14.7
Sample D Male 13.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.2
Samples: 4

Max nTPM: 23.4
Min nTPM: 16.1
Sample A Male 23.4
Sample B Male 16.1
Sample C Female 18.1
Sample D Female 19.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68191294 Antisense, RP_041123_02_C08, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.