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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:40.9 nTPM
HPA:40.9 nTPM
GTEx:39.8 nTPM
FANTOM5:25.2 Scaled Tags Per Million
Pig:26.6 nTPM
Mouse:12.9 nTPM
Allen mouse:1.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003982Antibody CAB010278
Glial cells Not detectedMedium
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 40.9
Sample id Sample description nTPM
Hippocampus
nTPM: 39.9
2529 Female, age 94, left hemisphere 44.5
2148 Female, age 91, left hemisphere 42.4
2621 Female, age 67, right hemisphere 39.6
1855 Male, age 76, left hemisphere 39.0
1911 Female, age 85, right hemisphere 38.0
1898 Male, age 80, left hemisphere 36.0
Dentate gyrus
nTPM: 40.6
2531 Female, age 67, both hemispheres 45.0
2528 Male, age 74, both hemispheres 40.6
1927 Female, age 91, both hemispheres 40.2
2530 Female, age 94, left hemisphere 39.9
2010 Male, age 76, both hemispheres 39.6
2246 Female, age 85, both hemispheres 38.3
Entorhinal gyrus
nTPM: 37.8
2117 Female, age 91, right hemisphere 43.2
1787 Male, age 76, left hemisphere 40.0
2764 Male, age 80, right hemisphere 39.6
2686 Male, age 75, right hemisphere 38.9
2613 Female, age 94, left hemisphere 33.5
1938 Female, age 85, left hemisphere 31.5
Hippocampus, CA1
nTPM: 40.5
2045 Male, age 76, both hemispheres 52.7
2082 Female, age 91, right hemisphere 44.3
2527 Male, age 74, both hemispheres 38.5
1873 Female, age 85, both hemispheres 35.9
2749 Male, age 80, left hemisphere 31.0
Hippocampus, CA2
nTPM: 39.3
1892 Male, age 76, both hemispheres 41.7
2113 Female, age 91, right hemisphere 40.0
1940 Female, age 85, left hemisphere 39.3
2437 Female, age 94, left hemisphere 39.0
1963 Male, age 80, left hemisphere 38.9
2249 Male, age 74, both hemispheres 36.8
Hippocampus, CA3
nTPM: 40.9
2861 Female, age 67, both hemispheres 48.2
1867 Male, age 76, both hemispheres 44.4
2620 Female, age 94, left hemisphere 39.4
1891 Female, age 85, both hemispheres 38.5
2436 Male, age 74, both hemispheres 37.6
2137 Male, age 80, left hemisphere 37.2
Parahippocampal cortex
nTPM: 37.3
2018 Male, age 76, both hemispheres 44.9
2245 Female, age 91, both hemispheres 41.4
2622 Female, age 67, right hemisphere 39.8
2250 Female, age 67, right hemisphere 39.1
1933 Female, age 85, both hemispheres 37.5
1990 Female, age 91, right hemisphere 35.7
2692 Male, age 74, both hemispheres 35.5
2532 Female, age 72, left hemisphere 33.8
2693 Female, age 94, both hemispheres 32.6
1850 Male, age 80, both hemispheres 32.5
Perirhinal gyrus
nTPM: 36.0
2521 Female, age 94, right hemisphere 38.3
1794 Male, age 80, right hemisphere 36.9
2848 Male, age 76, right hemisphere 36.0
1841 Female, age 85, right hemisphere 35.0
1847 Female, age 91, left hemisphere 33.5
Subiculum
nTPM: 39.1
2729 Female, age 91, right hemisphere 42.8
2042 Male, age 76, both hemispheres 42.4
2619 Male, age 74, both hemispheres 41.6
1901 Male, age 80, both hemispheres 37.7
1977 Female, age 85, both hemispheres 36.8
2438 Female, age 94, left hemisphere 33.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 39.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 39.8
Samples: 197

Max nTPM: 73.8
Min nTPM: 18.4
Std nTPM: 9.3
Median nTPM: 38.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 73.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 67.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 66.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 65.7
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 64.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 60.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 60.3
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 60.3
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 59.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 58.9
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 57.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 25.2
FF:10153-102I9 76 years, female 32.6
FF:10169-103B7 60 years, female 17.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 26.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 25.6
Samples: 4

Max nTPM: 31.0
Min nTPM: 19.3
Sample A Female 31.0
Sample B Female 23.8
Sample C Male 28.4
Sample D Male 19.3
Entorhinal cortex
nTPM: 26.6
Samples: 4

Max nTPM: 30.1
Min nTPM: 22.2
Sample A Female 27.1
Sample B Female 27.0
Sample C Male 30.1
Sample D Male 22.2
Subiculum
nTPM: 25.9
Samples: 4

Max nTPM: 33.2
Min nTPM: 21.7
Sample A Female 33.2
Sample B Female 25.3
Sample C Male 23.2
Sample D Male 21.7
Ventral hippocampus
nTPM: 25.5
Samples: 4

Max nTPM: 32.1
Min nTPM: 20.7
Sample A Female 22.9
Sample B Female 20.7
Sample C Male 32.1
Sample D Male 26.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 12.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 12.9
Samples: 4

Max nTPM: 15.0
Min nTPM: 11.3
Sample A Male 15.0
Sample B Male 13.6
Sample C Female 11.7
Sample D Female 11.3
Hippocampal formation
nTPM: 11.3
Samples: 4

Max nTPM: 12.0
Min nTPM: 10.4
Sample A Male 10.4
Sample B Male 11.1
Sample C Female 11.7
Sample D Female 12.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.3
71656704 Antisense, RP_050927_04_B08, Mouse strain C57BL/6J (56 days, male) 3.7
71148010 Antisense, RP_050719_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2
71325378 Antisense, RP_050825_02_G05, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.