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PKN1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.4 nTPM
HPA:48.4 nTPM
GTEx:48.1 nTPM
FANTOM5:29.0 Scaled Tags Per Million
Pig:35.9 nTPM
Mouse:8.5 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.8
2586 Male, age 75, left hemisphere 59.9
2666 Male, age 74, left hemisphere 54.5
2828 Female, age 72, unknown 53.8
2411 Female, age 72, unknown 48.8
1827 Male, age 72, unknown 47.6
2219 Male, age 76, both hemispheres 45.6
1830 Male, age 51, unknown 43.3
1870 Female, age 42, unknown 43.3
1833 Male, age 53, unknown 42.1
2019 Male, age 18, unknown 39.1
Dorsal raphe nucleus
nTPM: 47.8
2047 Male, age 72, unknown 52.5
1828 Male, age 53, unknown 49.4
2298 Female, age 72, unknown 47.6
2750 Male, age 76, both hemispheres 46.0
2016 Female, age 72, unknown 43.3
Inferior colliculus
nTPM: 41.8
1890 Male, age 53, unknown 44.5
2097 Female, age 72, unknown 43.8
2849 Male, age 72, unknown 39.8
1848 Female, age 42, unknown 39.3
Median raphe nucleus
nTPM: 46.3
2220 Male, age 76, midline 46.3
Pedunculopontine tegmental nucleus
nTPM: 43.0
2334 Male, age 80, both hemispheres 44.0
1921 Female, age 85, both hemispheres 43.1
2338 Male, age 61, both hemispheres 41.9
Periaquaductal grey, anterior
nTPM: 48.4
1795 Male, age 51, unknown 51.2
2502 Female, age 75, unknown 47.7
1947 Male, age 18, unknown 46.3
Periaquaductal grey, dorsal
nTPM: 42.6
1831 Male, age 72, unknown 44.7
2464 Female, age 72, unknown 44.3
1840 Male, age 53, unknown 40.8
2850 Male, age 76, both hemispheres 40.6
Periaquaductal grey, lateral
nTPM: 43.2
2053 Male, age 18, unknown 46.2
2272 Male, age 74, both hemispheres 42.4
2140 Male, age 76, both hemispheres 40.9
Pretectal area
nTPM: 43.5
1816 Male, age 51, unknown 47.5
1815 Male, age 53, unknown 46.0
1944 Female, age 72, unknown 45.7
2007 Male, age 72, unknown 44.1
2667 Female, age 75, unknown 43.5
2407 Male, age 75, both hemispheres 43.3
2316 Male, age 76, right hemisphere 43.2
2825 Male, age 18, unknown 42.5
1817 Female, age 42, unknown 41.4
2224 Female, age 72, unknown 40.6
2273 Male, age 74, both hemispheres 40.4
Red nucleus
nTPM: 44.3
2584 Male, age 75, left hemisphere 48.6
2588 Male, age 74, left hemisphere 47.9
2503 Female, age 72, unknown 47.8
2227 Male, age 72, unknown 46.3
2769 Male, age 72, unknown 46.1
2785 Male, age 18, unknown 44.3
1904 Male, age 53, unknown 43.5
1865 Male, age 51, unknown 42.8
1954 Female, age 42, unknown 41.7
2725 Female, age 75, unknown 41.2
2823 Male, age 76, right hemisphere 41.0
1821 Female, age 72, unknown 40.1
Substantia nigra
nTPM: 46.0
1916 Female, age 42, unknown 52.8
2665 Male, age 74, both hemispheres 51.4
1851 Male, age 51, unknown 49.8
2699 Male, age 18, unknown 48.2
2590 Female, age 75, unknown 46.7
2583 Male, age 75, right hemisphere 46.5
1889 Female, age 72, unknown 43.8
1941 Male, age 53, unknown 41.9
2409 Female, age 72, unknown 40.7
2241 Male, age 72, unknown 37.9
Superior colliculus
nTPM: 45.9
2261 Male, age 18, unknown 52.1
2664 Male, age 75, both hemispheres 49.8
1796 Male, age 53, unknown 49.0
2668 Female, age 75, unknown 48.4
2087 Female, age 72, unknown 47.0
1913 Female, age 42, unknown 46.4
1995 Male, age 72, unknown 44.8
2587 Male, age 74, left hemisphere 42.2
1839 Male, age 51, unknown 40.9
1895 Male, age 76, right hemisphere 37.9
Ventral tegmental area
nTPM: 45.7
1915 Female, age 42, unknown 47.5
2021 Male, age 53, unknown 47.5
2410 Female, age 72, unknown 46.1
1942 Male, age 51, unknown 45.5
2223 Female, age 72, unknown 44.0
2218 Male, age 76, both hemispheres 43.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.1
Samples: 139

Max nTPM: 71.6
Min nTPM: 27.6
Std nTPM: 7.8
Median nTPM: 47.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 71.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 69.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 68.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 68.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 65.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 64.1
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 62.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 62.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 62.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 61.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 60.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.0
FF:10158-103A5 76 years, female 29.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.9
Pig sample Sample description nTPM
Midbrain
nTPM: 34.4
Samples: 4

Max nTPM: 49.3
Min nTPM: 27.0
Sample A Female 49.3
Sample B Female 30.5
Sample C Male 30.8
Sample D Male 27.0
Periaqueductal gray
nTPM: 28.7
Samples: 3

Max nTPM: 31.9
Min nTPM: 25.5
Sample B Female 28.7
Sample C Male 31.9
Sample D Male 25.5
Substantia nigra
nTPM: 35.9
Samples: 4

Max nTPM: 39.2
Min nTPM: 33.4
Sample A Female 39.2
Sample B Female 33.4
Sample C Male 35.7
Sample D Male 35.3
Superior colliculi
nTPM: 33.1
Samples: 4

Max nTPM: 35.6
Min nTPM: 30.1
Sample A Female 35.6
Sample B Female 35.0
Sample C Male 30.1
Sample D Male 31.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.6
Samples: 4

Max nTPM: 9.6
Min nTPM: 8.0
Sample A Male 9.6
Sample B Male 8.0
Sample C Female 8.2
Sample D Female 8.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
71656704 Antisense, RP_050927_04_B08, Mouse strain C57BL/6J (56 days, male) 1.4
71325378 Antisense, RP_050825_02_G05, Mouse strain C57BL/6J (56 days, male) 0.2
71148010 Antisense, RP_050719_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.