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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.8 nTPM
HPA:30.8 nTPM
GTEx:39.9 nTPM
FANTOM5:62.6 Scaled Tags Per Million
Pig:20.7 nTPM
Mouse:31.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.7
2019 Male, age 18, unknown 34.8
2411 Female, age 72, unknown 32.5
2828 Female, age 72, unknown 30.3
1870 Female, age 42, unknown 29.8
1827 Male, age 72, unknown 28.8
1830 Male, age 51, unknown 27.9
2586 Male, age 75, left hemisphere 26.9
1833 Male, age 53, unknown 26.6
2666 Male, age 74, left hemisphere 24.6
2219 Male, age 76, both hemispheres 24.5
Dorsal raphe nucleus
nTPM: 28.4
2750 Male, age 76, both hemispheres 32.4
2298 Female, age 72, unknown 31.6
2016 Female, age 72, unknown 26.9
1828 Male, age 53, unknown 26.2
2047 Male, age 72, unknown 24.9
Inferior colliculus
nTPM: 25.9
2097 Female, age 72, unknown 28.6
1890 Male, age 53, unknown 26.9
1848 Female, age 42, unknown 25.6
2849 Male, age 72, unknown 22.3
Median raphe nucleus
nTPM: 24.9
2220 Male, age 76, midline 24.9
Pedunculopontine tegmental nucleus
nTPM: 27.0
2334 Male, age 80, both hemispheres 28.7
2338 Male, age 61, both hemispheres 26.5
1921 Female, age 85, both hemispheres 25.9
Periaquaductal grey, anterior
nTPM: 27.0
2502 Female, age 75, unknown 29.3
1795 Male, age 51, unknown 27.7
1947 Male, age 18, unknown 23.9
Periaquaductal grey, dorsal
nTPM: 24.8
2464 Female, age 72, unknown 28.3
1831 Male, age 72, unknown 26.1
1840 Male, age 53, unknown 22.7
2850 Male, age 76, both hemispheres 22.1
Periaquaductal grey, lateral
nTPM: 26.5
2272 Male, age 74, both hemispheres 29.9
2053 Male, age 18, unknown 26.6
2140 Male, age 76, both hemispheres 23.1
Pretectal area
nTPM: 30.2
2007 Male, age 72, unknown 36.3
1817 Female, age 42, unknown 32.6
2273 Male, age 74, both hemispheres 32.5
1815 Male, age 53, unknown 32.4
1816 Male, age 51, unknown 32.3
1944 Female, age 72, unknown 31.6
2667 Female, age 75, unknown 30.1
2224 Female, age 72, unknown 28.3
2316 Male, age 76, right hemisphere 27.7
2407 Male, age 75, both hemispheres 24.5
2825 Male, age 18, unknown 24.5
Red nucleus
nTPM: 30.8
2785 Male, age 18, unknown 37.0
2503 Female, age 72, unknown 33.9
1904 Male, age 53, unknown 32.4
1821 Female, age 72, unknown 32.2
2823 Male, age 76, right hemisphere 31.7
1865 Male, age 51, unknown 31.4
2769 Male, age 72, unknown 31.4
2227 Male, age 72, unknown 31.2
1954 Female, age 42, unknown 30.1
2725 Female, age 75, unknown 28.3
2588 Male, age 74, left hemisphere 25.2
2584 Male, age 75, left hemisphere 24.6
Substantia nigra
nTPM: 26.9
1889 Female, age 72, unknown 30.4
1941 Male, age 53, unknown 29.6
2590 Female, age 75, unknown 28.6
2583 Male, age 75, right hemisphere 28.2
1851 Male, age 51, unknown 28.1
1916 Female, age 42, unknown 26.4
2409 Female, age 72, unknown 25.3
2665 Male, age 74, both hemispheres 25.2
2241 Male, age 72, unknown 24.0
2699 Male, age 18, unknown 23.5
Superior colliculus
nTPM: 29.0
1913 Female, age 42, unknown 33.7
1995 Male, age 72, unknown 31.6
2087 Female, age 72, unknown 31.2
2261 Male, age 18, unknown 31.1
2587 Male, age 74, left hemisphere 30.7
1796 Male, age 53, unknown 29.1
1895 Male, age 76, right hemisphere 26.8
2668 Female, age 75, unknown 26.5
1839 Male, age 51, unknown 25.9
2664 Male, age 75, both hemispheres 23.4
Ventral tegmental area
nTPM: 27.9
2410 Female, age 72, unknown 31.7
2223 Female, age 72, unknown 29.6
1915 Female, age 42, unknown 27.1
2218 Male, age 76, both hemispheres 26.7
1942 Male, age 51, unknown 26.3
2021 Male, age 53, unknown 26.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.9
Samples: 139

Max nTPM: 78.2
Min nTPM: 25.3
Std nTPM: 8.6
Median nTPM: 38.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 78.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 74.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 63.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 63.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 57.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 57.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 57.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 56.4
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 55.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 53.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 50.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.6
FF:10158-103A5 76 years, female 62.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.7
Pig sample Sample description nTPM
Midbrain
nTPM: 19.3
Samples: 4

Max nTPM: 22.2
Min nTPM: 14.7
Sample A Female 22.2
Sample B Female 18.2
Sample C Male 21.9
Sample D Male 14.7
Periaqueductal gray
nTPM: 17.7
Samples: 3

Max nTPM: 18.9
Min nTPM: 16.5
Sample B Female 17.7
Sample C Male 18.9
Sample D Male 16.5
Substantia nigra
nTPM: 18.3
Samples: 4

Max nTPM: 20.4
Min nTPM: 17.5
Sample A Female 20.4
Sample B Female 17.6
Sample C Male 17.5
Sample D Male 17.6
Superior colliculi
nTPM: 20.7
Samples: 4

Max nTPM: 26.1
Min nTPM: 16.1
Sample A Female 20.0
Sample B Female 26.1
Sample C Male 20.5
Sample D Male 16.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.5
Samples: 4

Max nTPM: 32.4
Min nTPM: 29.7
Sample A Male 32.4
Sample B Male 29.7
Sample C Female 31.3
Sample D Female 32.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69782975 Antisense, RP_050505_04_B04, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas project is funded
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