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EMC3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.5 nTPM
HPA:29.5 nTPM
GTEx:26.9 nTPM
FANTOM5:55.8 Scaled Tags Per Million
Pig:19.4 nTPM
Mouse:71.7 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.3
2019 Male, age 18, unknown 29.3
2219 Male, age 76, both hemispheres 28.8
1827 Male, age 72, unknown 28.4
2411 Female, age 72, unknown 28.0
2586 Male, age 75, left hemisphere 27.9
1870 Female, age 42, unknown 27.2
1833 Male, age 53, unknown 26.6
2666 Male, age 74, left hemisphere 26.1
2828 Female, age 72, unknown 25.3
1830 Male, age 51, unknown 25.1
Dorsal raphe nucleus
nTPM: 28.2
2047 Male, age 72, unknown 31.0
1828 Male, age 53, unknown 28.7
2298 Female, age 72, unknown 28.4
2750 Male, age 76, both hemispheres 27.1
2016 Female, age 72, unknown 25.6
Inferior colliculus
nTPM: 25.5
1890 Male, age 53, unknown 27.6
2097 Female, age 72, unknown 27.0
1848 Female, age 42, unknown 25.7
2849 Male, age 72, unknown 21.9
Median raphe nucleus
nTPM: 27.1
2220 Male, age 76, midline 27.1
Pedunculopontine tegmental nucleus
nTPM: 28.1
2334 Male, age 80, both hemispheres 29.2
2338 Male, age 61, both hemispheres 28.6
1921 Female, age 85, both hemispheres 26.6
Periaquaductal grey, anterior
nTPM: 25.5
1947 Male, age 18, unknown 26.0
1795 Male, age 51, unknown 25.7
2502 Female, age 75, unknown 24.7
Periaquaductal grey, dorsal
nTPM: 24.5
2464 Female, age 72, unknown 25.0
1831 Male, age 72, unknown 24.6
1840 Male, age 53, unknown 24.5
2850 Male, age 76, both hemispheres 24.0
Periaquaductal grey, lateral
nTPM: 25.7
2272 Male, age 74, both hemispheres 26.9
2140 Male, age 76, both hemispheres 26.7
2053 Male, age 18, unknown 23.5
Pretectal area
nTPM: 28.0
2007 Male, age 72, unknown 31.1
1817 Female, age 42, unknown 29.7
1816 Male, age 51, unknown 29.6
2273 Male, age 74, both hemispheres 29.2
1944 Female, age 72, unknown 29.1
2407 Male, age 75, both hemispheres 28.1
1815 Male, age 53, unknown 27.0
2224 Female, age 72, unknown 26.8
2667 Female, age 75, unknown 26.8
2825 Male, age 18, unknown 25.7
2316 Male, age 76, right hemisphere 24.3
Red nucleus
nTPM: 26.5
2785 Male, age 18, unknown 29.5
2588 Male, age 74, left hemisphere 28.2
1865 Male, age 51, unknown 27.6
2725 Female, age 75, unknown 27.5
1821 Female, age 72, unknown 27.1
2584 Male, age 75, left hemisphere 26.4
2227 Male, age 72, unknown 26.3
1954 Female, age 42, unknown 26.2
1904 Male, age 53, unknown 25.2
2769 Male, age 72, unknown 25.1
2823 Male, age 76, right hemisphere 24.7
2503 Female, age 72, unknown 23.8
Substantia nigra
nTPM: 29.5
1916 Female, age 42, unknown 35.4
1851 Male, age 51, unknown 32.7
1941 Male, age 53, unknown 31.6
1889 Female, age 72, unknown 30.9
2241 Male, age 72, unknown 28.1
2665 Male, age 74, both hemispheres 27.8
2590 Female, age 75, unknown 27.4
2699 Male, age 18, unknown 27.3
2409 Female, age 72, unknown 27.1
2583 Male, age 75, right hemisphere 26.8
Superior colliculus
nTPM: 26.7
2087 Female, age 72, unknown 29.7
2668 Female, age 75, unknown 29.3
2261 Male, age 18, unknown 27.7
1796 Male, age 53, unknown 27.0
1995 Male, age 72, unknown 26.7
1895 Male, age 76, right hemisphere 26.5
2587 Male, age 74, left hemisphere 26.1
1913 Female, age 42, unknown 25.6
2664 Male, age 75, both hemispheres 25.3
1839 Male, age 51, unknown 23.3
Ventral tegmental area
nTPM: 28.1
2410 Female, age 72, unknown 30.9
1915 Female, age 42, unknown 29.9
1942 Male, age 51, unknown 28.1
2223 Female, age 72, unknown 27.3
2218 Male, age 76, both hemispheres 26.8
2021 Male, age 53, unknown 25.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.9
Samples: 139

Max nTPM: 50.5
Min nTPM: 13.7
Std nTPM: 8.1
Median nTPM: 25.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 50.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 49.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 45.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 45.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 45.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 43.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 43.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 43.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 42.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 42.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 40.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.8
FF:10158-103A5 76 years, female 55.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.4
Pig sample Sample description nTPM
Midbrain
nTPM: 19.2
Samples: 4

Max nTPM: 22.1
Min nTPM: 16.9
Sample A Female 22.1
Sample B Female 17.3
Sample C Male 20.3
Sample D Male 16.9
Periaqueductal gray
nTPM: 14.9
Samples: 3

Max nTPM: 15.8
Min nTPM: 13.5
Sample B Female 15.5
Sample C Male 15.8
Sample D Male 13.5
Substantia nigra
nTPM: 16.3
Samples: 4

Max nTPM: 20.7
Min nTPM: 13.7
Sample A Female 20.7
Sample B Female 13.7
Sample C Male 16.1
Sample D Male 14.6
Superior colliculi
nTPM: 19.4
Samples: 4

Max nTPM: 22.7
Min nTPM: 15.9
Sample A Female 21.9
Sample B Female 15.9
Sample C Male 22.7
Sample D Male 17.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 71.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.8
Samples: 4

Max nTPM: 75.0
Min nTPM: 68.6
Sample A Male 68.6
Sample B Male 69.0
Sample C Female 75.0
Sample D Female 74.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
67978660 Antisense, RP_040923_01_D12, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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