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PPDPF
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:217.1 nTPM
HPA:217.1 nTPM
GTEx:295.2 nTPM
FANTOM5:410.9 Scaled Tags Per Million
Pig:74.4 nTPM
Mouse:36.1 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 217.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 166.9
2586 Male, age 75, left hemisphere 193.5
2828 Female, age 72, unknown 176.7
1870 Female, age 42, unknown 176.2
1833 Male, age 53, unknown 174.5
1830 Male, age 51, unknown 171.2
2411 Female, age 72, unknown 169.7
2019 Male, age 18, unknown 159.2
2219 Male, age 76, both hemispheres 155.5
2666 Male, age 74, left hemisphere 147.4
1827 Male, age 72, unknown 145.0
Dorsal raphe nucleus
nTPM: 151.9
2750 Male, age 76, both hemispheres 180.8
2047 Male, age 72, unknown 154.9
1828 Male, age 53, unknown 151.0
2298 Female, age 72, unknown 140.9
2016 Female, age 72, unknown 131.9
Inferior colliculus
nTPM: 137.6
2849 Male, age 72, unknown 152.2
1890 Male, age 53, unknown 145.0
1848 Female, age 42, unknown 135.2
2097 Female, age 72, unknown 117.8
Median raphe nucleus
nTPM: 217.1
2220 Male, age 76, midline 217.1
Pedunculopontine tegmental nucleus
nTPM: 182.4
2338 Male, age 61, both hemispheres 228.9
2334 Male, age 80, both hemispheres 179.3
1921 Female, age 85, both hemispheres 139.0
Periaquaductal grey, anterior
nTPM: 145.4
1795 Male, age 51, unknown 152.4
2502 Female, age 75, unknown 148.9
1947 Male, age 18, unknown 134.9
Periaquaductal grey, dorsal
nTPM: 148.7
2850 Male, age 76, both hemispheres 178.4
1831 Male, age 72, unknown 154.0
2464 Female, age 72, unknown 134.2
1840 Male, age 53, unknown 128.4
Periaquaductal grey, lateral
nTPM: 150.8
2140 Male, age 76, both hemispheres 152.8
2053 Male, age 18, unknown 151.9
2272 Male, age 74, both hemispheres 147.6
Pretectal area
nTPM: 152.6
2407 Male, age 75, both hemispheres 167.9
1815 Male, age 53, unknown 161.8
1816 Male, age 51, unknown 161.7
2007 Male, age 72, unknown 161.1
1817 Female, age 42, unknown 158.6
2825 Male, age 18, unknown 154.7
1944 Female, age 72, unknown 150.0
2224 Female, age 72, unknown 147.5
2667 Female, age 75, unknown 147.1
2273 Male, age 74, both hemispheres 142.6
2316 Male, age 76, right hemisphere 125.2
Red nucleus
nTPM: 189.5
2503 Female, age 72, unknown 211.2
1865 Male, age 51, unknown 205.7
2769 Male, age 72, unknown 201.0
1904 Male, age 53, unknown 200.3
2227 Male, age 72, unknown 193.8
2588 Male, age 74, left hemisphere 190.6
2823 Male, age 76, right hemisphere 188.7
2785 Male, age 18, unknown 186.8
2584 Male, age 75, left hemisphere 183.5
1954 Female, age 42, unknown 176.8
1821 Female, age 72, unknown 173.6
2725 Female, age 75, unknown 161.9
Substantia nigra
nTPM: 178.0
2699 Male, age 18, unknown 209.4
1916 Female, age 42, unknown 201.6
2665 Male, age 74, both hemispheres 201.0
2583 Male, age 75, right hemisphere 186.8
1851 Male, age 51, unknown 180.7
2590 Female, age 75, unknown 176.8
1941 Male, age 53, unknown 169.9
1889 Female, age 72, unknown 164.5
2409 Female, age 72, unknown 154.5
2241 Male, age 72, unknown 134.7
Superior colliculus
nTPM: 167.2
2668 Female, age 75, unknown 193.0
1913 Female, age 42, unknown 188.4
2664 Male, age 75, both hemispheres 188.1
1995 Male, age 72, unknown 178.4
1796 Male, age 53, unknown 173.5
2587 Male, age 74, left hemisphere 169.6
2261 Male, age 18, unknown 156.1
2087 Female, age 72, unknown 147.9
1839 Male, age 51, unknown 143.8
1895 Male, age 76, right hemisphere 133.3
Ventral tegmental area
nTPM: 192.9
2223 Female, age 72, unknown 263.2
2218 Male, age 76, both hemispheres 200.4
1915 Female, age 42, unknown 181.7
2410 Female, age 72, unknown 172.7
2021 Male, age 53, unknown 170.0
1942 Male, age 51, unknown 169.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 295.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 295.2
Samples: 139

Max nTPM: 806.2
Min nTPM: 110.6
Std nTPM: 129.7
Median nTPM: 259.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 806.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 686.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 666.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 654.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 621.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 581.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 580.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 556.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 554.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 538.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 536.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 410.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 410.9
FF:10158-103A5 76 years, female 410.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.4
Pig sample Sample description nTPM
Midbrain
nTPM: 69.4
Samples: 4

Max nTPM: 130.6
Min nTPM: 36.0
Sample A Female 130.6
Sample B Female 62.8
Sample C Male 48.1
Sample D Male 36.0
Periaqueductal gray
nTPM: 52.3
Samples: 3

Max nTPM: 56.4
Min nTPM: 49.9
Sample B Female 50.7
Sample C Male 56.4
Sample D Male 49.9
Substantia nigra
nTPM: 74.4
Samples: 4

Max nTPM: 85.5
Min nTPM: 66.4
Sample A Female 85.5
Sample B Female 69.9
Sample C Male 66.4
Sample D Male 75.8
Superior colliculi
nTPM: 63.8
Samples: 4

Max nTPM: 77.9
Min nTPM: 47.4
Sample A Female 77.9
Sample B Female 74.2
Sample C Male 47.4
Sample D Male 55.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.2
Samples: 4

Max nTPM: 48.3
Min nTPM: 29.9
Sample A Male 35.6
Sample B Male 29.9
Sample C Female 30.8
Sample D Female 48.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68919880 Antisense, RP_050301_02_F11, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.