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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:21.6 nTPM
HPA:21.6 nTPM
GTEx:42.8 nTPM
FANTOM5:86.5 Scaled Tags Per Million
Pig:41.6 nTPM
Mouse:64.9 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA026092Antibody CAB011687
Glial cells MediumHigh
Neuronal cells HighHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.0
2846 Female, age 79, unknown 21.1
2481 Female, age 94, left hemisphere 20.5
1857 Female, age 85, left hemisphere 19.6
1781 Male, age 74, unknown 19.0
2288 Male, age 75, left hemisphere 18.8
1854 Male, age 80, left hemisphere 18.5
2290 Female, age 72, unknown 18.0
2289 Male, age 61, right hemisphere 16.5
Claustrum
nTPM: 18.2
1956 Male, age 74, unknown 20.8
2292 Female, age 85, both hemispheres 20.5
2196 Female, age 79, unknown 20.1
2392 Female, age 94, both hemispheres 18.5
2491 Male, age 75, both hemispheres 17.7
2645 Female, age 72, unknown 17.0
2198 Male, age 80, both hemispheres 16.9
2284 Female, age 91, both hemispheres 16.4
2568 Male, age 61, both hemispheres 16.3
Globus pallidus, externus
nTPM: 20.0
2395 Male, age 75, both hemispheres 20.9
1996 Male, age 80, right hemisphere 20.7
2772 Female, age 79, unknown 20.0
2567 Female, age 72, unknown 19.6
2646 Male, age 61, right hemisphere 18.7
Globus pallidus, internus
nTPM: 21.6
2287 Male, age 75, right hemisphere 24.6
2778 Female, age 91, both hemispheres 23.2
2483 Female, age 94, right hemisphere 22.1
2111 Female, age 85, right hemisphere 21.6
2037 Male, age 80, right hemisphere 20.5
1818 Male, age 74, unknown 19.8
2566 Female, age 72, unknown 19.2
Nucleus accumbens
nTPM: 20.2
2391 Female, age 94, left hemisphere 23.8
2698 Female, age 72, unknown 22.7
1783 Male, age 74, unknown 19.7
1806 Female, age 85, left hemisphere 19.7
1856 Female, age 91, right hemisphere 19.1
2732 Male, age 80, right hemisphere 19.1
2286 Male, age 75, left hemisphere 18.8
2824 Male, age 61, right hemisphere 18.5
Nucleus basalis of Meynert
nTPM: 18.7
2393 Male, age 80, right hemisphere 20.1
2821 Male, age 75, both hemispheres 19.7
2484 Female, age 94, left hemisphere 18.3
2569 Male, age 61, both hemispheres 16.8
Nucleus of the diagonal band
nTPM: 18.6
1979 Male, age 74, unknown 19.4
2195 Female, age 85, both hemispheres 19.0
1812 Female, age 91, both hemispheres 18.8
2775 Male, age 80, right hemisphere 18.6
2029 Male, age 61, right hemisphere 17.2
Olfactory tubercle
nTPM: 17.8
1846 Male, age 80, right hemisphere 20.0
2856 Male, age 75, right hemisphere 17.4
1998 Female, age 91, both hemispheres 16.8
2487 Female, age 94, left hemisphere 16.8
Putamen
nTPM: 19.5
2482 Female, age 94, left hemisphere 22.0
1829 Male, age 74, unknown 20.5
1838 Male, age 80, right hemisphere 19.6
1937 Female, age 91, right hemisphere 19.1
2466 Female, age 79, unknown 19.1
2647 Male, age 75, left hemisphere 18.4
2489 Female, age 72, unknown 18.1
Septal nuclei
nTPM: 18.3
2629 Female, age 94, right hemisphere 19.5
2199 Male, age 80, right hemisphere 19.1
1960 Male, age 74, unknown 18.9
2031 Female, age 72, unknown 18.9
2059 Female, age 85, both hemispheres 17.8
2009 Female, age 91, both hemispheres 17.3
2394 Male, age 61, left hemisphere 16.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.8
Samples: 246

Max nTPM: 84.9
Min nTPM: 18.2
Std nTPM: 8.3
Median nTPM: 42.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 84.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 67.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 64.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 63.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 62.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 62.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 60.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 59.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 57.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 56.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 56.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 42.3
Samples: 246

Max nTPM: 83.7
Min nTPM: 6.4
Std nTPM: 12.3
Median nTPM: 43.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 83.7
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 68.0
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 66.6
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 65.9
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 65.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 62.2
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 62.0
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 60.9
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 60.8
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 60.1
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 60.0
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Brain - Putamen (basal ganglia)
Average nTPM: 42.0
Samples: 205

Max nTPM: 67.3
Min nTPM: 22.2
Std nTPM: 8.8
Median nTPM: 41.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 67.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 65.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 61.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 60.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 59.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 59.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 59.1
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 59.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 58.9
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 58.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 57.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 75.3
FF:10164-103B2 76 years, female 75.3
Globus pallidus
Scaled Tags Per Million: 86.5
FF:10161-103A8 76 years, female 98.8
FF:10175-103C4 60 years, female 74.2
Nucleus accumbens
Scaled Tags Per Million: 75.0
FF:10037-101F1 23-56 years, mixed 75.0
Putamen
Scaled Tags Per Million: 83.7
FF:10176-103C5 60 years, female 83.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 41.6
Pig sample Sample description nTPM
Caudate
nTPM: 35.3
Samples: 4

Max nTPM: 38.7
Min nTPM: 31.5
Sample A Female 38.5
Sample B Female 31.5
Sample C Male 38.7
Sample D Male 32.5
Putamen
nTPM: 41.6
Samples: 4

Max nTPM: 53.0
Min nTPM: 35.1
Sample A Female 40.3
Sample B Female 35.1
Sample C Male 53.0
Sample D Male 38.0
Septum
nTPM: 36.7
Samples: 4

Max nTPM: 40.5
Min nTPM: 33.9
Sample A Female 40.5
Sample B Female 36.6
Sample C Male 33.9
Sample D Male 35.6
Ventral pallidum
nTPM: 36.7
Samples: 4

Max nTPM: 39.3
Min nTPM: 32.4
Sample A Female 39.3
Sample B Female 36.6
Sample C Male 32.4
Sample D Male 38.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 64.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 64.9
Samples: 4

Max nTPM: 66.6
Min nTPM: 63.7
Sample A Male 66.6
Sample B Male 63.7
Sample C Female 65.0
Sample D Female 64.2
Septum
nTPM: 64.8
Samples: 4

Max nTPM: 66.9
Min nTPM: 62.4
Sample A Male 65.2
Sample B Male 64.6
Sample C Female 62.4
Sample D Female 66.9
Ventral forebrain
nTPM: 58.7
Samples: 4

Max nTPM: 62.8
Min nTPM: 53.7
Sample A Male 62.8
Sample B Male 61.7
Sample C Female 53.7
Sample D Female 56.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
71723961 Antisense, RP_050921_01_C03, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
71723961 Antisense, RP_050921_01_C03, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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